論文

• Shuichiro Makigaki, Takashi Ishida. Sequence alignment generation using intermediate sequence search for homology modeling, Computational and Structural Biotechnology Journal, ELSEVIER, Vol. 18, pp. 2043-2050, July 2020.
• Shuichiro Makigaki, Takashi Ishida. Sequence alignment using machine learning for accurate template-based protein structure prediction, Bioinformatics, btz483, Oxford University Press, Vol. 36, 1, pp. 104-111, Jan. 2020.
• 成井政人, 石田貴士, 牧垣秀一朗. 機械学習を用いたホモロジーモデリングのための配列アラインメント生成手法の高速化, 研究報告数理モデル化と問題解決（MPS）, 2019-MPS-124, 4, pp. 1-4, July 2019.

国際会議発表 (査読有り)

• Masato Narui, Takashi Ishida, Shuichiro Makigaki. Acceleration of Machine Learning-based Sequence Alignment Generation, The 25th Int'l Conf on Parallel and Distributed Processing Techniques and Applications(PDPTA2019) CSCE'19, Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA), The Steering Committee of The World Congress in Computer Science, Computer Engineering and Applied Computing (WorldComp), pp. 129-134, July 2019.
• Shuichiro Makigaki, Takashi Ishida. Improvement of template-based protein structure prediction by using chimera alignment, 8th International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB), Proceedings of the 2018 8th International Conference on Bioscience, Biochemistry and Bioinformatics, ACM, pp. 32-37, Jan. 2018.

国内会議発表 (査読なし・不明)

• Shuichiro Makigaki, Takashi Ishida. Remote protein homolog detetction based on sequence similarity networks, Informatics In Biology, Medicine and Pharmacology 2019 (IIBMP2019), Sept. 2019.
• 成井政人, 石田貴士, 牧垣秀一朗. k最近傍法を用いた構造予測向け配列アラインメント生成手法の高速化, 情報処理学会 第 58 回バイオ情報学(SIGBIO)研究会, June 2019.
• 牧垣秀一朗, 石田貴士. 配列類似性ネットワークに基づく高感度な遠縁タンパク質検索, 第 58 回バイオ情報学(SIGBIO)研究会, June 2019.
• 牧垣秀一朗, 石田貴士. 機械学習を用いたホモロジーモデリングのための配列アライメント手法, 第57 回バイオ情報学(SIGBIO)研究会, Mar. 2019.

学位論文

• Development of a protein sequence alignment method for accurate homology modeling,  Thesis,  Doctor (Engineering),  Tokyo Institute of Technology,  2020/12/31,   
• Development of a protein sequence alignment method for accurate homology modeling,  Exam Summary,  Doctor (Engineering),  Tokyo Institute of Technology,  2020/12/31,   
• Development of a protein sequence alignment method for accurate homology modeling,  Summary,  Doctor (Engineering),  Tokyo Institute of Technology,  2020/12/31,   

[ BibTeX 形式で保存 ]    [ 論文・著書をCSV形式で保存 ]    [ 特許をCSV形式で保存 ]