@article{CTT100911761,
  author = {Hiroshi Mori and Tamotsu Kato and Hiroaki Ozawa and Mitsuo Sakamoto and Takumi Murakami and Todd D Taylor and Atsushi Toyoda and Moriya Ohkuma and Ken Kurokawa and Hiroshi Ohno},
  title = {Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community},
  journal = {DNA Research},
  year = 2023,
}

@article{CTT100911762,
  author = {Taro Onuma and Toshitaka Yamauchi and Hina Kosakamoto and Hibiki Kadoguchi and Takayuki Kuraishi and Takumi Murakami and Hiroshi Mori and Masayuki Miura and Fumiaki Obata},
  title = {Recognition of commensal bacterial peptidoglycans defines Drosophila gut homeostasis and lifespan},
  journal = {PLoS Genetics},
  year = 2023,
}

@article{CTT100911763,
  author = {Kana Morinaga and Hiroyuki Kusada and Sachiko Sakamoto and Takumi Murakami and Atsushi Toyoda and Hiroshi Mori and Xian-Ying Meng and Motoko Takashino and Kazutoshi Murotomi and Hideyuki Tamaki},
  title = {Granulimonas faecalis gen. nov., sp. nov., and Leptogranulimonas caecicola gen. nov., sp. nov., novel lactate-producing Atopobiaceae bacteria isolated from mouse intestines, and an emended description of the family Atopobiaceae},
  journal = {International Journal of Systematic and Evolutionary Microbiology},
  year = 2022,
}

@article{CTT100911757,
  author = {Kyosuke Yakabe and Seiichiro Higashi and Masahiro Akiyama and Hiroshi Mori and Takumi Murakami and Atsushi Toyoda and Yuta Sugiyama and Shigenobu Kishino and Kenji Okano and Akiyoshi Hirayama},
  title = {Dietary-protein sources modulate host susceptibility to Clostridioides difficile infection through the gut microbiota},
  journal = {Cell Reports},
  year = 2022,
}

@article{CTT100911755,
  author = {Takumi Murakami and Nozomu Takeuchi and Hiroshi Mori and Yuu Hirose and Arwyn Edwards and Tristram Irvine-Fynn and Zhongqin Li and Satoshi Ishii and Takahiro Segawa},
  title = {Metagenomics reveals global-scale contrasts in nitrogen cycling and cyanobacterial light-harvesting mechanisms in glacier cryoconite},
  journal = {Microbiome},
  year = 2022,
}

@article{CTT100911754,
  author = {Mitsuo Sakamoto and Nao Ikeyama and Masahiro Yuki and Takumi Murakami and Hiroshi Mori and Takao Iino and Moriya Ohkuma},
  title = {Adlercreutzia hattorii sp. nov., an equol non-producing bacterium isolated from human faeces},
  journal = {International Journal of Systematic and Evolutionary Microbiology},
  year = 2021,
}

@article{CTT100911753,
  author = {Mitsuo Sakamoto and Nao Ikeyama and Atsushi Toyoda and Takumi Murakami and Hiroshi Mori and Sho Morohoshi and Tadao Kunihiro and Takao Iino and Moriya Ohkuma},
  title = {Coprobacter secundus subsp. similis subsp. nov. and Solibaculum mannosilyticum gen. nov., sp. nov., isolated from human feces},
  journal = {Microbiology and Immunology},
  year = 2021,
}

@article{CTT100911752,
  author = {Mitsuo Sakamoto and Nao Ikeyama and Atsushi Toyoda and Takumi Murakami and Hiroshi Mori and Moriya Ohkuma},
  title = {Complete genome sequence of Faecalibacillus intestinalis JCM 34082, isolated from feces from a healthy Japanese female},
  journal = {Microbiology Resource Announcements},
  year = 2020,
}

@article{CTT100911750,
  author = {Nao Ikeyama and Takumi Murakami and Atsushi Toyoda and Hiroshi Mori and Takao Iino and Moriya Ohkuma and Mitsuo Sakamoto},
  title = {Microbial interaction between the succinate-utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron},
  journal = {Microbiologyopen},
  year = 2020,
}

@article{CTT100911748,
  author = {Mariko Takeuchi and Hirokazu Kuwahara and Takumi Murakami and Kazuki Takahashi and Rei Kajitani and Atsushi Toyoda and Takehiko Itoh and Moriya Ohkuma and Yuichi Hongoh},
  title = {Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut},
  journal = {The ISME Journal},
  year = 2020,
}

@article{CTT100911751,
  author = {Toshitaka Yamauchi and Ayano Oi and Hina Kosakamoto and Yoriko Akuzawa-Tokita and Takumi Murakami and Hiroshi Mori and Masayuki Miura and Fumiaki Obata},
  title = {Gut bacterial species distinctively impact host purine metabolites during aging in Drosophila},
  journal = {Iscience},
  year = 2020,
}

@article{CTT100911747,
  author = {Nao Ikeyama and Atsushi Toyoda and Sho Morohoshi and Tadao Kunihiro and Takumi Murakami and Hiroshi Mori and Takao Iino and Moriya Ohkuma and Mitsuo Sakamoto},
  title = {Amedibacterium intestinale gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium dolichum Moore et al. 1976 (Approved Lists 1980) as Amedibacillus dolichus gen. nov., comb. nov},
  journal = {International Journal of Systematic and Evolutionary Microbiology},
  year = 2020,
}

@article{CTT100911749,
  author = {Hina Kosakamoto and Toshitaka Yamauchi and Yoriko Akuzawa-Tokita and Kei Nishimura and Tomoyoshi Soga and Takumi Murakami and Hiroshi Mori and Kyosuke Yamamoto and Ryo Miyazaki and Akiko Koto},
  title = {Local necrotic cells trigger systemic immune activation via gut microbiome dysbiosis in Drosophila},
  journal = {Cell Reports},
  year = 2020,
}

@article{CTT100832499,
  author = {Takeuchi M. and Kuwahara H. and Murakami T. and Takahashi K. and Kajitani R. and Toyoda A. and Itoh T. and Ohkuma M. and Hongoh Y},
  title = {Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut},
  journal = {The ISME Journal},
  year = 2020,
}

@article{CTT100911746,
  author = {Mitsuo Sakamoto and Nao Ikeyama and Atsushi Toyoda and Takumi Murakami and Hiroshi Mori and Takao Iino and Moriya Ohkuma},
  title = {Dialister hominis sp. nov., isolated from human faeces},
  journal = {International journal of systematic and evolutionary microbiology},
  year = 2020,
}

@article{CTT100911795,
  author = {Yuniar Devi Utami and Hirokazu Kuwahara and Katsura Igai and Takumi Murakami and Kaito Sugaya and Takahiro Morikawa and Yuichi Nagura and Masahiro Yuki and Pinsurang Deevong and Tetsushi Inoue and Kumiko Kihara and Nathan Lo and Akinori Yamada and Moriya Ohkuma and Yuichi Hongoh},
  title = {Genome analyses of uncultured TG2/ZB3 bacteria in ‘Margulisbacteria’ specifically attached to ectosymbiotic spirochetes of protists in the termite gut},
  journal = {The ISME Journal},
  year = 2019,
}

@article{CTT100911745,
  author = {Mitsuo Sakamoto and Nao Ikeyama and Takumi Murakami and Hiroshi Mori and Masahiro Yuki and Moriya Ohkuma},
  title = {Comparative genomics of Parolsenella catena and Libanicoccus massiliensis: Reclassification of Libanicoccus massiliensis as Parolsenella massiliensis comb. nov.},
  journal = {International Journal of Systematic and Evolutionary Microbiology},
  year = 2019,
}

@article{CTT100911743,
  author = {Takumi Murakami and Shu Onouchi and Katsura Igai and Moriya Ohkuma and Yuichi Hongoh},
  title = {Ectosymbiotic bacterial microbiota densely colonize the surface of thelastomatid nematodes in the gut of the wood-feeding cockroach Panesthia angustipennis},
  journal = {FEMS microbiology ecology},
  year = 2019,
}

@article{CTT100810498,
  author = {Takumi Murakami and Syu Onouchi and Katsura Igai and Moriya Ohkuma and Yuichi Hongoh},
  title = {Ectosymbiotic bacterial microbiota densely colonize the surface of thelastomatid nematodes in the gut of the wood-feeding cockroach Panesthia angustipennis},
  journal = {FEMS Microbiology Ecology},
  year = 2019,
}

@article{CTT100911744,
  author = {Takumi Murakami and Hiroshi Mori and Viktoria A Shcherbakova and Yoshitaka Yoshimura and Takahiro Segawa},
  title = {Draft genome sequence of Clostridium tagluense strain A121T, isolated from a permafrost core in the Canadian High Arctic},
  journal = {Microbiology Resource Announcements},
  year = 2019,
}

@article{CTT100780883,
  author = {Takumi Murakami and Takahiro Segawa and Nozomu Takeuchi and Gonzalo Barcaza Sepúlveda and Pedro Labarca and Shiro Kohshima and Yuichi Hongoh},
  title = {Metagenomic analyses highlight the symbiotic association between the glacier stonefly Andiperla willinki and its bacterial gut community},
  journal = {Environmental Microbiology},
  year = 2018,
}

@article{CTT100780874,
  author = {Yuniar Devi Utami and Hirokazu Kuwahara and Takumi Murakami and Takahiro Morikawa and Kaito Sugaya and Kumiko Kihara and Masahiro Yuki and Nathan Lo and Pinsurang Deevong and Sasitorn Hasin and Warin Boonriam and Tetsushi Inoue and Akinori Yamada and Moriya Ohkuma and Yuichi Hongoh},
  title = {Phylogenetic diversity and single-cell genome analysis of "Melainabacteria", a non-photosynthetic cyanobacterial group, in the termite gut},
  journal = {Microbes and Envitonments},
  year = 2018,
}

@article{CTT100744200,
  author = {Takumi Murakami and Takahiro Segawa and Roman Dial and Nozomu Takeuchi and Shiro Kohshima and Yuichi Hongoh},
  title = {Bacterial microbiota associated with the glacier ice worm is dominated by both worm-specific and glacier-derived facultative lineage},
  journal = {},
  year = 2017,
}

@article{CTT100714089,
  author = {Takumi Murakami and Takahiro Segawa and Dylan Bodington and Roman Dial and Nozomu Takeuchi and Shiro Kohshima and Yuichi Hongoh},
  title = {Census of bacterial microbiota associated with the glacier ice worm Mesenchytraeus solifugus},
  journal = {FEMS Microbiology Ecology},
  year = 2015,
}

@inproceedings{CTT100916625,
  author = {村上匠 and 瀬川高弘 and 森宙史 and 本郷裕一 and 竹内望},
  title = {氷河微生物群集「クリオコナイト」の形成過程をメタゲノムデータから解き明かす},
  booktitle = {},
  year = 2024,
}

@inproceedings{CTT100916624,
  author = {大須賀奨 and 高橋一樹 and 猪飼桂 and 雪真弘 and 清水美智留 and 桑原宏和 and 村上匠 and 大熊盛也 and 本郷裕一},
  title = {シロアリ腸内原生生物に細胞内共生するPlanctomycetota 門細菌の発見とゲノム解析},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100916623,
  author = {Fu Jieyang and Liu Yiting and 猪飼桂 and 桑原宏和 and 木原久美子 and 村上匠 and 大熊盛也 and 本郷 裕一},
  title = {シロアリ腸内原生生物Mixotricha paradoxa と2種の細胞表面付着共生細菌の共生機構の解析},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100916622,
  author = {杉山奈緒 and 高橋一樹 and 関謙二郎 and 堀川雄太郎 and 佐藤朋之 and 桑原宏和 and 村上匠 and 大熊盛也 and 本郷裕一},
  title = {シロアリ腸内原生生物細胞共生Mycoplasmatota 門細菌の生態とゲノム解析},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100916620,
  author = {板垣優大 and 高橋一樹 and 雪真弘 and 清水美智留 and 村上匠 and 大熊盛也 and 本郷裕一},
  title = {シロアリ腸内で優占するBetaproteobacteria綱細菌の1細胞ゲノム解析},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100916618,
  author = {村上匠 and 瀬川高弘 and 森宙史 and 本郷裕一 and 竹内望},
  title = {様々な地域の氷河を対象とした細菌群集メタゲノム解析},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100916621,
  author = {齋藤崇登 and 室岡聡 and 猪飼桂 and 高橋一樹 and 佐藤朋之 and 村上匠 and 大熊盛也 and 本郷裕一},
  title = {他細菌種に特異的に付着共生するAlphaproteobacteria の形態とゲノム解析},
  booktitle = {},
  year = 2023,
}

@inproceedings{CTT100780841,
  author = {Yuniar Devi Utami and Hirokazu Kuwahara and Katsura Igai and Takumi Murakami and Takahiro Morikawa and Kaito Sugaya and Masahiro Yuki and Akinori Yamada and Moriya Ohkuma and Yuichi Hongoh},
  title = {Genome analyses of uncultured ZB3/TG2 bacteria (“Margulisbacteria”) attached to ectosymbiotic spirochetes of protist cells in the termite gut},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100780819,
  author = {ウタミ ユニア デビ and 桑原宏和 and 村上匠 and 猪飼桂 and 守川貴裕 and 菅谷快斗 and 雪真弘 and 山田明徳 and 大熊盛也 and 本郷裕一},
  title = {Genome analyses of non-photosynthetic cyanobacteria associated with protist cells in the termite gut},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100780831,
  author = {Takumi Murakami and Takahiro Segawa and Nozomu Takeuchi and Pedro Labarca and Gonzalo Barcaza Sepúlveda and Shiro Kohshima and Yuichi Hongoh},
  title = {Analyses on the community structure and metagenome of the bacterial consortium from the gut of glacier stonefly},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100780827,
  author = {村上匠 and 瀬川高弘 and 竹内望 and ラバルサペドロ and Sepúlveda Gonzalo Barcaza and 幸島司郎 and 本郷裕一},
  title = {氷河に生息するカワゲラの腸内細菌叢メタゲノム解析},
  booktitle = {},
  year = 2018,
}

@inproceedings{CTT100780804,
  author = {小野内思有 and 村上匠 and 大熊盛也 and 本郷裕一},
  title = {食材性オオゴキブリ腸内線虫の体表に共生する細菌群集},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100780797,
  author = {Takumi Murakami and Takahiro Segawa and Nozomu Takeuchi and Pedro Labarca and Gonzalo Barcaza Sepúlveda and Shiro Kohshima and Yuichi Hongoh},
  title = {Analyses of bacterial community structures associated with glacier-adapted invertebrates},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100780794,
  author = {村上匠 and 瀬川高弘 and 竹内望 and ラバルサペドロ and セプルベーダ ゴンサロ バルサーサ and 幸島司郎 and 本郷裕一},
  title = {パタゴニアに生息する氷河カワゲラの網羅的腸内細菌叢解析},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100727044,
  author = {村上匠 and 瀬川高弘 and 竹内望 and Roman Dial and Pedro Labarca and Gonzalo B. Sepulveda and 幸島司郎 and 本郷裕一},
  title = {氷河に特化した無脊椎動物の共生細菌群集構造解析},
  booktitle = {},
  year = 2016,
}

@misc{CTT100736069,
  author = {村上匠},
  title = {氷河無脊椎動物に共生する細菌叢の網羅的群集構造・機能遺伝子解析},
  year = 2017,
}

@misc{CTT100760580,
  author = {村上匠},
  title = {氷河無脊椎動物に共生する細菌叢の網羅的群集構造・機能遺伝子解析},
  year = 2017,
}

@misc{CTT100736070,
  author = {村上匠},
  title = {氷河無脊椎動物に共生する細菌叢の網羅的群集構造・機能遺伝子解析},
  year = 2017,
}

@misc{CTT100736068,
  author = {村上匠},
  title = {氷河無脊椎動物に共生する細菌叢の網羅的群集構造・機能遺伝子解析},
  year = 2017,
}



@phdthesis{CTT100736069,
  author = {村上匠},
  title = {氷河無脊椎動物に共生する細菌叢の網羅的群集構造・機能遺伝子解析},
  school = {東京工業大学},
  year = 2017,
}

@phdthesis{CTT100760580,
  author = {村上匠},
  title = {氷河無脊椎動物に共生する細菌叢の網羅的群集構造・機能遺伝子解析},
  school = {東京工業大学},
  year = 2017,
}

@phdthesis{CTT100736070,
  author = {村上匠},
  title = {氷河無脊椎動物に共生する細菌叢の網羅的群集構造・機能遺伝子解析},
  school = {東京工業大学},
  year = 2017,
}

@phdthesis{CTT100736068,
  author = {村上匠},
  title = {氷河無脊椎動物に共生する細菌叢の網羅的群集構造・機能遺伝子解析},
  school = {東京工業大学},
  year = 2017,
}