@article{CTT100904046,
  author = {Daiki Erikawa and Nobuaki Yasuo and Takamasa Suzuki and Shogo Nakamura and Masakazu Sekijima},
  title = {Gargoyles: An Open Source Graph-Based Molecular Optimization Method Based on Deep Reinforcement Learning},
  journal = {ACS Omega},
  year = 2023,
}

@article{CTT100922719,
  author = {Ryunosuke Yoshino and Nobuaki Yasuo and Yohsuke Hagiwara and Takashi Ishida and Daniel Ken Inaoka and Yasushi Amano and Yukihiro Tateishi and Kazuki Ohno and Ichiji Namatame and Tatsuya Niimi and Masaya Orita and Kiyoshi Kita and Yutaka Akiyama and Masakazu Sekijima},
  title = {Discovery of a Hidden Trypanosoma cruzi Spermidine Synthase Binding Site and Inhibitors through In Silico, In Vitro, and X-ray Crystallography},
  journal = {ACS omega},
  year = 2023,
}

@article{CTT100904047,
  author = {Ryo Nakayama and Ryota Shimizu and Taishi Haga and Takefumi Kimura and Yasunobu Ando and Shigeru Kobayashi and Nobuaki Yasuo and Masakazu Sekijima and Taro Hitosugi},
  title = {Tuning of Bayesian optimization for materials synthesis: simulation of the one-dimensional case},
  journal = {Science and Technology of Advanced Materials: Methods},
  year = 2022,
}

@article{CTT100904048,
  author = {Nurkanto Arif and Riyo Imamura and Yulia Rahmawati and Erwahyuni Endang Prabandari and Danang Waluyo and Takeshi Annoura and Kazuki Yamamoto and Masakazu Sekijima and Yuki Nishimura and Takayoshi Okabe and Tomoo Shiba and Norio Shibata and Hirotatsu Kojima and James Duffy and Tomoyoshi Nozaki},
  title = {Dephospho-Coenzyme A Kinase Is an Exploitable Drug Target against Plasmodium falciparum: Identification of Selective Inhibitors by High-Throughput Screening of a Large Chemical Compound Library},
  journal = {Antimicrobial Agents and Chemotherapy},
  year = 2022,
}

@article{CTT100904085,
  author = {Junya Tabata and Takashi  Nakaoku and Mitsugu Araki and Ryunosuke Yoshino and Shinji Kohsaka and Ayaka Otsuka and Masachika Ikegami and Ayako Ui and Shin-ichiro Kanno and Keiko Miyoshi and Shigeyuki Matsumoto and yukari sagae and Akira Yasui and Masakazu Sekijima and Hiroyuki Mano and Yasushi Okuno and Aikou Okamoto and Takashi Kohno},
  title = {Novel Calcium-Binding Ablating Mutations Induce Constitutive RET Activity and Drive Tumorigenesis},
  journal = {Cancer Research},
  year = 2022,
}

@article{CTT100904086,
  author = {Kazuki Takeda and Kosuke Manago and Ayuko Morita and Yusuke K. Kawai and Nobuaki Yasuo and Masakazu Sekijima and Yoshinori Ikenaka and Takuma Hashimoto and Ryuichi Minato and Yusuke Oyamada and Kazuo Horikoshi and Hajime Suzuki and Mayumi Ishizuka and Shouta M.M. Nakayama},
  title = {Toxicokinetic analysis of the anticoagulant rodenticides warfarin & diphacinone in Egyptian fruit bats (Rousettus aegyptiacus) as a comparative sensitivity assessment for Bonin fruit bats (Pteropus pselaphon)},
  journal = {Ecotoxicology and Environmental Safety},
  year = 2022,
}

@article{CTT100904088,
  author = {R Prabakaran and Puneet Rawat and Nobuaki Yasuo and Masakazu Sekijima and Sandeep Kumar and Gromiha Michael},
  title = {Effect of charged mutation on aggregation of a pentapeptide: Insights from molecular dynamics simulations},
  journal = {Proteins: Structure, Function, and Bioinformatics},
  year = 2022,
}

@article{CTT100904050,
  author = {Takayuki Kimura and Nobuaki Yasuo and Masakazu Sekijima and Brooke Lustig},
  title = {Statistical potentials for RNA-protein interactions optimized by CMA-ES},
  journal = {Journal of Molecular Graphics and Modelling},
  year = 2022,
}

@article{CTT100904049,
  author = {Kazuki Z Yamamoto and NOBUAKI YASUO and Masakazu Sekijima},
  title = {Screening for Inhibitors of Main Protease in SARS-CoV-2: In Silico and In Vitro Approach Avoiding Peptidyl Secondary Amides},
  journal = {Journal of Chemical Information and Modeling},
  year = 2022,
}

@article{CTT100904051,
  author = {Masakazu Sekijima and Masakazu Sekijima},
  title = {MERMAID: an open source automated hit-to-lead method based on deep reinforcement learning},
  journal = {Journal of Cheminformatics},
  year = 2021,
}

@article{CTT100876904,
  author = {Nobuaki Yasuo and Takashi Ishida and Masakazu Sekijima},
  title = {Computer aided drug discovery review for infectious diseases with case study of anti-Chagas project},
  journal = {},
  year = 2021,
}

@article{CTT100904052,
  author = {Nobuaki Yasuo and Takashi Ishida and Masakazu Sekijima},
  title = {Computer aided drug discovery review for infectious diseases with case study of anti-Chagas project},
  journal = {Parasitology International},
  year = 2021,
}

@article{CTT100904053,
  author = {Rajib Acharjee and Keith Talaam and Endah D. Hartuti and Yuichi Matsuo and Takaya Sakura and Bundutidi M. Gloria and Shinya Hidano and Yasutoshi KIDO and Mihoko Mori and Kazuro Shiomi and Masakazu Sekijima and Tomoyoshi Nozaki and Kousuke Umeda and yoshifumi nishikawa and Shinjiro Hamano and Kiyoshi Kita and Daniel Ken INAOKA},
  title = {Biochemical Studies of Mitochondrial Malate: Quinone Oxidoreductase from <i>Toxoplasma gondii</i>},
  journal = {International Journal of Molecular Sciences},
  year = 2021,
}

@article{CTT100904054,
  author = {Masakazu Sekijima},
  title = {Tackling Covid‐19 using disordered‐to‐order transition of residues in the spike protein upon angiotensin‐converting enzyme 2 binding},
  journal = {Proteins: Structure, Function, and Bioinformatics},
  year = 2021,
}

@article{CTT100904055,
  author = {Masakazu Sekijima},
  title = {Identification of key interactions between SARS-CoV-2 main protease and inhibitor drug candidates},
  journal = {Scientific Reports},
  year = 2020,
}

@article{CTT100891505,
  author = {Masakazu Sekijima},
  title = {Identification of key interactions between SARS-CoV-2 main protease and inhibitor drug candidates},
  journal = {Scientific Reports},
  year = 2020,
}

@article{CTT100904056,
  author = {Yu Miyazaki and Ryo Nakayama and Nobuaki Yasuo and Yuki Watanabe and Ryota Shimizu and Daniel M. Packwood and Kazunori Nishio and Yasunobu Ando and Masakazu Sekijima and Taro Hitosugi},
  title = {Bayesian statistics-based analysis of AC impedance spectra},
  journal = {AIP Advances},
  year = 2020,
}

@article{CTT100904057,
  author = {Misa Sayama and Akiharu Uwamizu and Yuko Otani and Asuka Inoue and Junken Aoki and Masakazu Sekijima and Tomohiko Ohwada},
  title = {Membrane Phospholipid Analogues as Molecular Rulers to Probe the Position of the Hydrophobic Contact Point of Lysophospholipid Ligands on the Surface of G-Protein-Coupled Receptor during Membrane Approach},
  journal = {Biochemistry},
  year = 2020,
}

@article{CTT100904059,
  author = {Masakazu Sekijima},
  title = {Molecular Dynamics Simulation reveals the mechanism by which the Influenza Cap-dependent Endonuclease acquires resistance against Baloxavir marboxil},
  journal = {Scientific Reports},
  year = 2019,
}

@article{CTT100904058,
  author = {Masakazu Sekijima},
  title = {A prospective compound screening contest identified broader inhibitors for Sirtuin 1},
  journal = {Scientific Reports},
  year = 2019,
}

@article{CTT100813782,
  author = {Ryunosuke Yoshino and Nobuaki Yasuo and Masakazu Sekijima},
  title = {Molecular Dynamics Simulation reveals the mechanism by which the Influenza Cap-dependent Endonuclease acquires resistance against Baloxavir marboxil},
  journal = {Scientific Reports},
  year = 2019,
}

@article{CTT100810746,
  author = {Shuntaro Chiba and Masahito Ohue and Anastasiia Gryniukova and Petro Borysko and Sergey Zozulya and Nobuaki Yasuo and Ryunosuke Yoshino and Kazuyoshi Ikeda and Woong-Hee Shin and Daisuke Kihara and Mitsuo Iwadate and Hideaki Umeyama and Takaaki Ichikawa and Reiji Teramoto and Kun-Yi Hsin and Vipul Gupta and Hiroaki Kitano and Mika Sakamoto and Akiko Higuchi and Nobuaki Miura and Kei Yura and Masahiro Mochizuki and Chandrasekaran Ramakrishnan and A. Mary Thangakani and D. Velmurugan and M. Michael Gromiha and Itsuo Nakane and Nanako Uchida and Hayase Hakariya and Modong Tan and Hironori Nakamura and Shogo Suzuki and Tomoki Ito and Masahiro Kawatani and Kentaroh Kudoh and Sakurako Takashina and Kazuki Yamamoto and Yoshitaka Moriwaki and Keita Oda and Daisuke Kobayashi and Tatsuya Okuno and Shintaro Minami and George Chikenji and Philip Prathipati and Chioko Nagao and Attayeb Mohsen and Mari Ito and Kenji Mizuguchi and Teruki Honma and Takashi Ishida and Takatsugu Hirokawa and Yutaka Akiyama and Masakazu Sekijima.},
  title = {A prospective compound screening contest identified broader inhibitors for Sirtuin 1},
  journal = {Scientific Reports},
  year = 2019,
}

@article{CTT100813783,
  author = {Sherlyn  Jemimah and Masakazu Sekijima and Michael Gromiha},
  title = {ProAffiMuSeq: sequence-based method to predict the binding free energy change of protein–protein complexes upon mutation using functional classification},
  journal = {Bioinformatics},
  year = 2019,
}

@article{CTT100904060,
  author = {Masakazu Sekijima},
  title = {ProAffiMuSeq: sequence-based method to predict the binding free energy change of protein–protein complexes upon mutation using functional classification},
  journal = {Bioinformatics},
  year = 2019,
}

@article{CTT100808551,
  author = {仙石愼太郎 and 関嶋政和 and 伊波興一朗 and 小野寺玲子},
  title = {AI/ビッグデータ，ICT と医薬品 ─ 知財・標準の側面から},
  journal = {仙石慎太郎, 関嶋政和, 伊波興一朗, 小野寺玲子},
  year = 2019,
}

@article{CTT100813768,
  author = {Nobuaki Yasuo and Masakazu Sekijima},
  title = {Improved Method of Structure-Based Virtual Screening via Interaction-Energy-Based Learning},
  journal = {Journal of Chemical Information and Modeling},
  year = 2019,
}

@article{CTT100904061,
  author = {Nobuaki Yasuo and Masakazu Sekijima},
  title = {Improved Method of Structure-Based Virtual Screening via Interaction-Energy-Based Learning},
  journal = {Journal of Chemical Information and Modeling},
  year = 2019,
}

@article{CTT100813769,
  author = {Masakazu Sekijima},
  title = {CoDe-DTI: Collaborative Deep Learning-based Drug-Target Interaction Prediction},
  journal = {},
  year = 2018,
}

@article{CTT100904062,
  author = {Nobuaki Yasuo and Yusuke Nakashima and Masakazu Sekijima},
  title = {CoDe-DTI: Collaborative Deep Learning-based Drug-Target Interaction Prediction},
  journal = {2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)},
  year = 2018,
}

@article{CTT100783049,
  author = {Wakui, N. and Yoshino, R. and Yasuo, N. and Ohue, M. and Sekijima, M.},
  title = {Exploring the selectivity of inhibitor complexes with Bcl-2 and Bcl-XL: A molecular dynamics simulation approach},
  journal = {Journal of Molecular Graphics and Modelling},
  year = 2018,
}

@article{CTT100766874,
  author = {Ramakrishnan C and Thangakani AM and Velmurugan D and Krishnan DA and Sekijima M and Akiyama Y and Gromiha MM.},
  title = {Identification of type I and type II inhibitors of c-Yes kinase using in silico and experimental techniques},
  journal = {Journal of Biomolecular Structure and Dynamics},
  year = 2018,
}

@article{CTT100904063,
  author = {Wakui N and Yoshino R and Yasuo N and Ohue M and Sekijima M},
  title = {Exploring the selectivity of inhibitor complexes with Bcl-2 and Bcl-XL: A molecular dynamics simulation approach.},
  journal = {Journal of molecular graphics & modelling},
  year = 2017,
}

@article{CTT100766244,
  author = {Shuntaro Chiba and Takashi Ishida and Kazuyoshi Ikeda and Masahiro Mochizuki and Reiji Teramoto and Y-h. Taguchi and Mitsuo Iwadate and Hideaki Umeyama and Chandrasekaran Ramakrishnan and A. Mary Thangakani and D. Velmurugan and M. Michael Gromiha and Tatsuya Okuno and Koya Kato and Shintaro Minami and George Chikenji and Shogo D. Suzuki and Keisuke Yanagisawa and Woong-Hee Shin and Daisuke Kihara and Kazuki Z. Yamamoto and Yoshitaka Moriwaki and Nobuaki Yasuo and Ryunosuke Yoshino and Sergey Zozulya and Petro Borysko and Roman Stavniichuk and Teruki Honma and Takatsugu Hirokawa and Yutaka Akiyama and Masakazu Sekijima},
  title = {An iterative compound screening contest method for identifying target protein inhibitors using the tyrosine-protein kinase Yes},
  journal = {Scientific Reports},
  year = 2017,
}

@article{CTT100904064,
  author = {Masakazu Sekijima},
  title = {In silico, in vitro, X-ray crystallography, and integrated strategies for discovering spermidine synthase inhibitors for Chagas disease.},
  journal = {Scientific reports},
  year = 2017,
}

@article{CTT100766242,
  author = {Ryunosuke Yoshino and Nobuaki Yasuo and Yohsuke Hagiwara and Takashi Ishida and Daniel Ken Inaoka and Yasushi Amano and Yukihiro Tateishi and Kazuki Ohno and Ichiji Namatame and Tatsuya Niimi and Masaya Orita and Kiyoshi Kita and Yutaka Akiyama and Masakazu Sekijima},
  title = {In silico, in vitro, X-ray crystallography, and integrated strategies for discovering spermidine synthase inhibitors for Chagas disease},
  journal = {Scientific Reports},
  year = 2017,
}

@article{CTT100756184,
  author = {Masakazu Sekijima},
  title = {In silico, in vitro, X-ray crystallography, and integrated strategies for discovering spermidine synthase inhibitors for Chagas disease.},
  journal = {Scientific reports},
  year = 2017,
}

@article{CTT100904065,
  author = {Masakazu Sekijima},
  title = {Identification of type I and type II inhibitors of c-Yes kinase using in silico and experimental techniques.},
  journal = {Journal of biomolecular structure & dynamics},
  year = 2017,
}

@article{CTT100709036,
  author = {Shuntaro Chiba and Kazuyoshi Ikeda and Takashi Ishida and M. Michael Gromiha and Y-h. Taguchi and Mitsuo Iwadate and Hideaki Umeyama and Kun-Yi Hsin and Hiroaki Kitano and Kazuki Yamamoto and Nobuyoshi Sugaya and Koya Kato and Tatsuya Okuno and George Chikenji and Masahiro Mochizuki and Nobuaki Yasuo and Ryunosuke Yoshino and Keisuke Yanagisawa and Tomohiro Ban and Reiji Teramoto and Chandrasekaran Ramakrishnan and A. Mary Thangakani and D. Velmurugan and Philip Prathipati and Junichi Ito and Yuko Tsuchiya and Kenji Mizuguchi and Teruki Honma and Takatsugu Hirokawa and Yutaka Akiyama and Masakazu Sekijima},
  title = {Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target},
  journal = {Scientific Reports},
  year = 2015,
}

@article{CTT100709056,
  author = {Ryunosuke Yoshino and Nobuaki Yasuo and Daniel Ken Inaoka and Yohsuke Hagiwara and Kazuki Ohno and Masaya Orita and Masayuki Inoue and Tomoo Shiba and Shigeharu Harada and Teruki Honma and Emmanuel Oluwadare Balogun and Josmar Rodrigues da Rocha and Carlos Alberto Montanari and Kiyoshi Kita and Masakazu Sekijima},
  title = {Pharmacophore Modeling for Anti-Chagas Drug Design Using the Fragment Molecular Orbital Method},
  journal = {PLOS ONE},
  year = 2015,
}

@article{CTT100813770,
  author = {Nagarajan R and Chothani SP and Ramakrishnan C and Sekijima M and Gromiha MM},
  title = {Structure based approach for understanding organism specific recognition of protein-RNA complexes.},
  journal = {},
  year = 2015,
}

@article{CTT100904066,
  author = {Chiba S and Ikeda K and Ishida T and Gromiha MM and Taguchi YH and Iwadate M and Umeyama H and Hsin KY and Kitano H and Yamamoto K and Sugaya N and Kato K and Okuno T and Chikenji G and Mochizuki M and Yasuo N and Yoshino R and Yanagisawa K and Ban T and Teramoto R and Masakazu Sekijima},
  title = {Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target.},
  journal = {},
  year = 2015,
}

@article{CTT100904068,
  author = {Nagarajan R and Chothani SP and Ramakrishnan C and Sekijima M and Gromiha MM},
  title = {Structure based approach for understanding organism specific recognition of protein-RNA complexes.},
  journal = {},
  year = 2015,
}

@article{CTT100904067,
  author = {Yoshino R and Yasuo N and Inaoka DK and Hagiwara Y and Ohno K and Orita M and Inoue M and Shiba T and Harada S and Honma T and Balogun EO and da Rocha JR and Montanari CA and Kita K and Sekijima M},
  title = {Pharmacophore modeling for anti-Chagas drug design using the fragment molecular orbital method.},
  journal = {},
  year = 2015,
}

@article{CTT100904069,
  author = {Hagiwara Y and Ohno K and Orita M and Koga R and Endo T and Akiyama Y and Sekijima M},
  title = {Accelerating quantum chemistry calculations with graphical processing units - toward in high-density (HD) silico drug discovery.},
  journal = {},
  year = 2013,
}

@article{CTT100665992,
  author = {Hagiwara Y and Ohno K and Orita M and Koga R and Endo T and Akiyama Y and Sekijima M.},
  title = {Accelerating quantum chemistry calculations with graphical processing units - toward in high-density (HD) silico drug discovery},
  journal = {Curr Comput Aided Drug Des. 2013},
  year = 2013,
}

@article{CTT100813771,
  author = {Hagiwara Y and Ohno K and Orita M and Koga R and Endo T and Akiyama Y and Sekijima M},
  title = {Accelerating quantum chemistry calculations with graphical processing units - toward in high-density (HD) silico drug discovery.},
  journal = {},
  year = 2013,
}

@article{CTT100904070,
  author = {Takano R and Kiso M and Igarashi M and Le QM and Sekijima M and Ito K and Takada A and Kawaoka Y},
  title = {Molecular mechanisms underlying oseltamivir resistance mediated by an I117V substitution in the neuraminidase of subtype H5N1 avian influenza A viruses.},
  journal = {},
  year = 2013,
}

@article{CTT100645023,
  author = {Ryo Takano and Maki Kiso and Manabu Igarashi and Quynh Mai Le and Masakazu Sekijima and Ito Kimihito and Ayato Takada and Yoshihiro Kawaoka},
  title = {Molecular mechanisms underlying oseltamivir resistance mediated by an I117V substitution in the NA of H5N1 avian influenza viruses},
  journal = {Journal of Infectious Diseases},
  year = 2012,
}

@article{CTT100904071,
  author = {Saito S and Ohno K and Sekijima M and Suzuki T and Sakuraba H},
  title = {Database of the clinical phenotypes, genotypes and mutant arylsulfatase B structures in mucopolysaccharidosis type VI.},
  journal = {},
  year = 2012,
}

@article{CTT100813772,
  author = {Saito S and Ohno K and Sekijima M and Suzuki T and Sakuraba H},
  title = {Database of the clinical phenotypes, genotypes and mutant arylsulfatase B structures in mucopolysaccharidosis type VI.},
  journal = {},
  year = 2012,
}

@article{CTT100644292,
  author = {Seiji Saito and Kazuki Ohno and Masakazu Sekijima and Toshihiro Suzuki and Hitoshi Sakuraba},
  title = {Database of the clinical phenotypes, genotypes and mutant arylsulfatase B structures in mucopolysaccharidosis type VI},
  journal = {Journal of Human Genetics},
  year = 2012,
}

@article{CTT100633650,
  author = {Takahiro Shinozaki and Toshinao Iwaki and Shiqiao Du and Masakazu Sekijima and Sadaoki Furui},
  title = {Distance-based factor graph linearization and sampled max-sum algorithm for efficient 3D potential decoding of macromolecules},
  journal = {IPSJ Transaction on Bioinformatics},
  year = 2011,
}

@article{CTT100625471,
  author = {Mayumi Kamada and Mikito Toda and Masakazu Sekijima and Masami Takata and Kazuki Joe},
  title = {Analysis of motion features for molecular dynamics simulation of proteins},
  journal = {Chemical Physics Letters},
  year = 2011,
}

@article{CTT100904072,
  author = {Sugawara K and Saito S and Sekijima M and Ohno K and Tajima Y and Kroos MA and Reuser AJ and Sakuraba H},
  title = {Structural modeling of mutant alpha-glucosidases resulting in a processing/transport defect in Pompe disease.},
  journal = {},
  year = 2009,
}

@article{CTT100813773,
  author = {Sugawara K and Saito S and Sekijima M and Ohno K and Tajima Y and Kroos MA and Reuser AJ and Sakuraba H},
  title = {Structural modeling of mutant alpha-glucosidases resulting in a processing/transport defect in Pompe disease.},
  journal = {},
  year = 2009,
}

@article{CTT100904073,
  author = {Honda S and Akiba T and Kato YS and Sawada Y and Sekijima M and Ishimura M and Ooishi A and Watanabe H and Odahara T and Harata K},
  title = {Crystal structure of a ten-amino acid protein.},
  journal = {},
  year = 2008,
}

@article{CTT100813774,
  author = {Honda S and Akiba T and Kato YS and Sawada Y and Sekijima M and Ishimura M and Ooishi A and Watanabe H and Odahara T and Harata K},
  title = {Crystal structure of a ten-amino acid protein.},
  journal = {},
  year = 2008,
}

@article{CTT100813775,
  author = {Sekijima M and Motono C and Yamasaki S and Kaneko K and Akiyama Y},
  title = {Molecular dynamics simulation of dimeric and monomeric forms of human prion protein: insight into dynamics and properties.},
  journal = {},
  year = 2003,
}

@article{CTT100904074,
  author = {Sekijima M and Motono C and Yamasaki S and Kaneko K and Akiyama Y},
  title = {Molecular dynamics simulation of dimeric and monomeric forms of human prion protein: insight into dynamics and properties.},
  journal = {},
  year = 2003,
}

@inproceedings{CTT100911732,
  author = {Hayato Fujita and Akihiro Nomura and Toshio Endo and Masakazu Sekijima},
  title = {Enhancing the Performance of AlphaFold Through Modified Storage Method and Optimization of HHblits on TSUBAME3.0 Supercomputer},
  booktitle = {proceedings of 2023 Congress in Computer Science, Computer Engineering, & Applied Computing (CSCE)},
  year = 2023,
}

@inproceedings{CTT100904083,
  author = {Mami Ozawa and Nobuaki Yasuo and Masakazu Sekijima},
  title = {An Improved Model for Predicting Compound Retrosynthesizability Using Machine Learning},
  booktitle = {2022 IEEE 22nd International Conference on Bioinformatics and Bioengineering (BIBE)},
  year = 2022,
}

@inproceedings{CTT100869007,
  author = {藤田 隼斗 and 野村 哲弘 and 遠藤 敏夫 and 関嶋 政和},
  title = {タンパク質立体構造予測システム AlphaFold の TSUBAME3.0 上での高速化},
  booktitle = {情報処理学会研究報告},
  year = 2022,
}

@inproceedings{CTT100846498,
  author = {中山 亮 and 清水 亮太 and 芳賀 太史 and 木村 武史 and 安藤 康伸 and 安尾 信明 and 関嶋 政和 and 一杉 太郎},
  title = {物質合成に適したベイズ最適化のハイパーパラメータの探索},
  booktitle = {},
  year = 2021,
}

@inproceedings{CTT100851779,
  author = {千葉 真人 and 酒向 正己 and 林 慶浩 and 安藤 慎治 and 安尾 信明 and 関嶋 政和 and 川内 進},
  title = {量子化学計算と機械学習による有機高分子の屈折率予測},
  booktitle = {高分子学会予稿集},
  year = 2020,
}

@inproceedings{CTT100837745,
  author = {酒向 正己 and 千葉 真人 and 安尾 信明 and 渡部 一貴 and 瀧本 啓人 and 一杉 太郎 and 関嶋 政和},
  title = {Pb-free perovskite 化合物の bandgap 予測と合成結果},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100818236,
  author = {中山 亮 and 宮崎 優 and 安尾 信明 and 渡邊 佑紀 and 清水 亮太 and 西尾 和記 and 安藤 康伸 and 関嶋 政和 and 一杉 太郎},
  title = {ベイズ統計に基づいた単純な電気化学素子のインピーダンススペクトル解析},
  booktitle = {},
  year = 2020,
}

@inproceedings{CTT100793334,
  author = {宮崎 優 and 安尾 信明 and 渡邊 佑紀 and 中山 亮 and 清水 亮太 and 西尾 和記 and 安藤 康伸 and 関嶋 政和 and 一杉 太郎},
  title = {ベイズ推定を用いた客観的な電気化学インピーダンス解析},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100793318,
  author = {宮崎 優 and 安尾 信明 and 渡邊 佑紀 and 中山 亮 and 清水 亮太 and 西尾 和記 and 安藤 康伸 and 関嶋 政和 and 一杉 太郎},
  title = {ベイズ統計を用いた客観的な電気化学インピーダンススペクトル解析},
  booktitle = {},
  year = 2019,
}

@inproceedings{CTT100783054,
  author = {Naoki Wakui and Ryunosuke Yoshino and Nobuaki Yasuo and Masahito Ohue and Masakazu Sekijima},
  title = {Exploring the selectivity of inhibitor complexes with Bcl-2 and Bcl-XL: a molecular dynamics simiulation approach},
  booktitle = {},
  year = 2017,
}

@inproceedings{CTT100754255,
  author = {篠崎隆宏 and 関嶋政和},
  title = {SCMS2.0によるタンパク質ポテンシャルエネルギー最小化の諸条件における評価},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100669689,
  author = {杉浦典和 and 石田貴士 and 秋山泰 and 関嶋政和},
  title = {de Bruijn Graphの分割によるVelvetの消費メモリの低減},
  booktitle = {情報処理学会研究報告},
  year = 2013,
}

@inproceedings{CTT100669695,
  author = {齊藤有紀 and 石田貴士 and 関嶋政和 and 秋山泰},
  title = {結合自由エネルギー予測を用いたクリアランス経路予測の改善に関する研究},
  booktitle = {情報処理学会研究報告},
  year = 2013,
}

@inproceedings{CTT100669693,
  author = {吉川舜亮 and 石田貴士 and 関嶋政和 and 秋山泰},
  title = {Sparse k-mer graphアルゴリズムの評価とVelvetへの実装},
  booktitle = {情報処理学会研究報告},
  year = 2013,
}

@inproceedings{CTT100640046,
  author = {杉浦典和 and 石田貴士 and 関嶋政和 and 秋山泰},
  title = {ハッシュテーブルの分割によるde novoアセンブリの改良},
  booktitle = {情報処理学会研究報告},
  year = 2012,
}

@inproceedings{CTT100634916,
  author = {猪瀬直人 and 篠崎隆宏 and 杜世橋 and 古井貞熙 and 関嶋政和},
  title = {Slice Chain Max-Sumアルゴリズムによるタンパク質のポテンシャルエネルギー最小化に関する研究},
  booktitle = {},
  year = 2012,
}

@inproceedings{CTT100634211,
  author = {Takaaki Sasaki and Masakazu Sekijima},
  title = {Development of Protein Ligand Binding Site Prediction System by Dynamics of Water Molecules},
  booktitle = {Biophysical Society 56th Annual Meeting Program},
  year = 2012,
}

@inproceedings{CTT100645017,
  author = {冨士香奈 and 関嶋政和 and 藤崎弘士 and 戸田幹人},
  title = {生体分子の分子動力学に対する時系列解析ー集団運動の揺らぎと構造変化の関係を探るー},
  booktitle = {生物物理},
  year = 2012,
}

@inproceedings{CTT100645016,
  author = {冨士香奈 and 関嶋政和 and 藤崎 弘士 and 戸田幹人},
  title = {生体分子の分子動力学に対する時系列解析ー集団運動の揺らぎと構造変化の関係を探るーII},
  booktitle = {},
  year = 2012,
}

@inproceedings{CTT100645019,
  author = {N. Inose and T. Shinozaki and S. Du and S. Furui and M. Sekijima},
  title = {Protein Potential Energy Minimization Using Slice Chain Max-Sum Algorithm},
  booktitle = {},
  year = 2012,
}

@inproceedings{CTT100632837,
  author = {Shiqiao Du and Takuro Udagawa and Toshio Endo and Masakazu Sekijima},
  title = {Molecular Dynamics Simulation of a Biomolecule with High Speed, Low Power and Accuracy Using GPU-Accelerated TSUBAME2.0 Supercomputer},
  booktitle = {Proceedings of Asia-Pacific Signal and Information Processing Association Annual Summit and Conference (APSIPA ASC 2011)},
  year = 2011,
}

@inproceedings{CTT100631019,
  author = {Takahiro Shinozaki and Masakazu Sekijima and Shigeki Hagihara and Sadaoki Furui},
  title = {Compact speech decoder based on pure functional programming},
  booktitle = {Proc. APSIPA ASC 2011},
  year = 2011,
}

@inproceedings{CTT100633396,
  author = {冨士香奈 and 関嶋政和 and 戸田幹人},
  title = {分子動力学の時系列データ解析ー側鎖の構造変化と運動ー},
  booktitle = {},
  year = 2011,
}

@inproceedings{CTT100633394,
  author = {篠崎隆宏 and 岩木聡直 and 杜世橋 and 関嶋政和 and 古井貞熙},
  title = {Distance based Graph Linearization and Sampled Max-sum Algorithm for Efficient 3D Potential Decoding of Macromolecules},
  booktitle = {情報処理学会研究会報告},
  year = 2011,
}

@inproceedings{CTT100626183,
  author = {佐々木孝章 and 関嶋政和},
  title = {タンパク質中の水分子の情報エントロピーによるリガンド結合部位予測},
  booktitle = {第11回日本蛋白質科学会年会 プログラム・要旨集},
  year = 2011,
}

@inproceedings{CTT100625027,
  author = {Takahiro Shinozaki and Masakazu Sekijima and Shigeki Hagihara and Sadaoki Furui},
  title = {A compact speech decoder based on pure functional programming},
  booktitle = {Manuscript for presentation at IPSJ-SIGPRO, 25 April 2011.},
  year = 2011,
}

@inproceedings{CTT100754989,
  author = {篠崎隆宏 and 関嶋政和 and 萩原茂樹 and 古井貞熙},
  title = {純粋関数型言語を用いた超コンパクトデコーダの開発},
  booktitle = {},
  year = 2011,
}

@inproceedings{CTT100626857,
  author = {佐々木孝章 and 関嶋政和},
  title = {情報エントロピーによるタンパク質のリガンド結合部位予測},
  booktitle = {},
  year = 2011,
}

@inproceedings{CTT100625007,
  author = {尾渡裕成 and 関嶋政和 and 秋山 泰},
  title = {タンパク質-リガンド間の結合性解析の自動パイプライン化},
  booktitle = {},
  year = 2011,
}

@inproceedings{CTT100626188,
  author = {宇田川拓郎 and 関嶋政和},
  title = {分子動力学法のマルチノード環境におけるGPUの電力効率の評価},
  booktitle = {},
  year = 2011,
}

@inproceedings{CTT100626177,
  author = {佐々木孝章 and 関嶋政和},
  title = {タンパク質内の水分子のダイナミクス解析によるリガンド結合部位予測},
  booktitle = {情報処理学会研究報告},
  year = 2010,
}

@inproceedings{CTT100625472,
  author = {Takuro Udagawa and Masakazu Sekijima},
  title = {Energy Consumption of GPU with Molecular Dynamics},
  booktitle = {Proceedings of the 22th IASTED International Conference on Parallel and Distributed Computing and Systems},
  year = 2010,
}

@inproceedings{CTT100626178,
  author = {宇田川拓郎 and 関嶋政和},
  title = {GPUを用いた分子動力学法の高速化と省電力化},
  booktitle = {情報処理学会研究報告},
  year = 2010,
}

@inproceedings{CTT100612363,
  author = {篠崎 隆宏 and 関嶋 政和 and 萩原 茂樹 and 古井 貞熙},
  title = {柔軟でコンパクトな純粋関数型デコーダの検討},
  booktitle = {日本音響学会2010年秋季講演論文集},
  year = 2010,
}

@inproceedings{CTT100604322,
  author = {松崎裕介 and 大上雅史 and 松崎由理 and 佐藤智之 and 関嶋政和 and 秋山泰},
  title = {タンパク質の特性に基づくunboundドッキングのための剛体予測手法の改良},
  booktitle = {研究報告バイオ情報学（BIO）},
  year = 2010,
}

@inproceedings{CTT100593481,
  author = {Yusuke Matsuzaki and Yuri Matsuzaki and Masakazu Sekijima and Yutaka Akiyama},
  title = {Protein structure sampling based on molecular dynamics and improvement of docking prediction},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@inproceedings{CTT100593491,
  author = {Yusei Owatari and Masakazu Sekijima and Yutaka Akiyama},
  title = {Binding analysis of neuraminidase inhibitors by fragment MO calculation},
  booktitle = {Proc. BIOINFO 2009 CBI-KSBSB Joint Conference},
  year = 2009,
}

@inproceedings{CTT100590410,
  author = {尾渡裕成 and 関嶋政和 and 秋山泰},
  title = {フラグメントMO法によるノイラミニダーゼ阻害薬の結合性解析},
  booktitle = {情報処理学会研究報告},
  year = 2009,
}

@inproceedings{CTT100590384,
  author = {松崎裕介 and 松崎由理 and 関嶋政和 and 秋山泰},
  title = {分子動力学法に基づくタンパク質構造サンプリングとドッキング予測の改良},
  booktitle = {情報処理学会研究報告},
  year = 2009,
}

@inproceedings{CTT100813921,
  author = {関嶋 政和 and 高崎 慎也 and 中村 周吾 and 池口 満徳 and 清水 謙多郎},
  title = {サブタスク間の依存関係に基づくスケジューリング機構を備えた並列プログラミング環境の開発},
  booktitle = {情報処理学会論文誌プログラミング（PRO）},
  year = 2000,
}

@inproceedings{CTT100813920,
  author = {関嶋 政和 and 高崎慎也 and 中村 周吾 and 池口 満徳 and 清水 謙多郎},
  title = {サブタスク間の依存関係に基づくスケジューリング機構を備えた並列プログラミング環境の開発},
  booktitle = {情報処理学会論文誌プログラミング（PRO）},
  year = 2000,
}

@misc{CTT100860420,
  author = {関嶋政和 and LIGEN and 安尾信明},
  title = {化合物生成装置、化合物生成方法、学習装置、学習方法及びプログラム},
  howpublished = {登録特許},
  year = 2024,
  month  = {},
  note   = {特願2020-063193(2020/03/31), 特開2021-068410(2021/04/30), 特許第7483244号(2024/05/07)}
}


@misc{CTT100840043,
  author = {関嶋政和 and 依田洸 and 安尾信明},
  title = {立体構造判定装置、立体構造判定方法、立体構造の判別器学習装置、立体構造の判別器学習方法及びプログラム},
  howpublished = {登録特許},
  year = 2022,
  month  = {},
  note   = {特願2019-015086(2019/01/31), 特開2020-123189(2020/08/13), 特許第7168979号(2022/11/01)}
}