@article{CTT100747028,
  author = {Arzuba Akter and Tadasuke Ooka and Yasuhiro Gotoh and Seigo Yamamoto and Hiromi Fujita and Fumio Terasoma and Kouji Kida and Masakatsu Taira and Fumiko Nakadouzono and Mutsuyo Gokuden and Manabu Hirano and Mamoru Miyashiro and Kouichi Inari and Yukie Shimazu and Kenji Tabara and Atsushi Toyoda and Dai Yoshimura and Takehiko Itoh and Tomokazu Kitano and Mitsuhiko P. Sato and Keisuke Katsura and Shakhinur Islam Mondal and Yoshitoshi Ogura and Shuji Ando and Tetsuya Hayashi},
  title = {Extremely Low Genomic Diversity of Rickettsia japonica Distributed in Japan},
  journal = {Genome Biology and Evolution},
  year = 2017,
}

@article{CTT100747034,
  author = {Vicky L Hunt and Isheng J Tsai and Avril Coghlan and Adam J Reid and Nancy Holroyd and Bernardo J Foth and Alan Tracey and James A Cotton and Eleanor J Stanley and Helen Beasley and Hayley M Bennett and Karen Brooks and Bhavana Harsha and Rei Kajitani and Arpita Kulkarni and Dorothee Harbecke and Eiji Nagayasu and Sarah Nichol and Yoshitoshi Ogura and Michael A Quail and Nadine Randle and Dong Xia and Norbert W Brattig and Hanns Soblik and Diogo M Ribeiro and Alejandro Sanchez-Flores and Tetsuya Hayashi and Takehiko Itoh and Dee R Denver and Warwick Grant and Jonathan D Stoltzfus and James B Lok and Haruhiko Murayama and Jonathan Wastling and Adrian Streit and Taisei Kikuchi and Mark Viney and Matthew Berriman},
  title = {The genomic basis of parasitism in the Strongyloides Glade of nematodes},
  journal = {Nature Genetics},
  year = 2016,
}

@article{CTT100747033,
  author = {Mariko Naito and Yoshitoshi Ogura and Takehiko Itoh and Mikio Shoji and Masaaki Okamoto and Tetsuya Hayashi and Koji Nakayama},
  title = {The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat},
  journal = {DNA Research},
  year = 2016,
}

@article{CTT100747040,
  author = {Rei Kajitani and Kouta Toshimoto and Hideki Noguchi and Atsushi Toyoda and Yoshitoshi Ogura and Miki Okuno and Mitsuru Yabana and Masayuki Harada and Eiji Nagayasu and Haruhiko Maruyama and Yuji Kohara and Asao Fujiyama and Tetsuya Hayashi and Takehiko Itoh},
  title = {Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads},
  journal = {Genome Research},
  year = 2014,
}

@article{CTT100747046,
  author = {Eiji Nagayasu and Yoshitoshi Ogura and Takehiko Itoh and Ayako Yoshida and Gunimala Chakraborty and Tetsuya Hayashi and Haruhiko Maruyama},
  title = {Transcriptomic analysis of four developmental stages of Strongyloides venezuelensis},
  journal = {Parasitology International},
  year = 2013,
}

@article{CTT100747057,
  author = {Mainil JG and Bardiau M and Ooka T and Ogura Y and Murase K and Etoh Y and Ichihara S and Horikawa K and Buvens G and Piérard D and Itoh T and Hayashi T.},
  title = {Typing of O26 enterohaemorrhagic and enteropathogenic Escherichia coli isolated from humans and cattle with IS621 multiplex PCR-based fingerprinting},
  journal = {Journal of Applied Microbiology},
  year = 2011,
}

@article{CTT100747056,
  author = {Tomomi Kuwahara and Yositoshi Ogura and Kenshiro Oshima and Ken Kurokawa and Tadasuke Ooka and Hideki Hirakawa and Takehiko Itoh and Haruyuki Nakayama-Imaohji and Minoru Ichimura and Kikuji Itoh and Chieko Ishifune and Yoichi Maekawa and Koji Yasutomo and Masahira Hattori and Tetsuya Hayashi},
  title = {The Lifestyle of the Segmented Filamentous Bacterium: A Non-Culturable Gut-Associated Immunostimulating Microbe Inferred by Whole-Genome Sequencing},
  journal = {DNA Research},
  year = 2011,
}

@article{CTT100747070,
  author = {Md Asadulghani and Yoshitoshi Ogura and Tadasuke Ooka and Takehiko Itoh and Akira Sawaguchi and Atsushi Iguchi and Keisuke Nakayama and Tetsuya Hayashi},
  title = {The Defective Prophage Pool of Escherichia coli O157: Prophage-Prophage Interactions Potentiate Horizontal Transfer of Virulence Determinants},
  journal = {Plos Pathogens},
  year = 2009,
}

@article{CTT100615304,
  author = {Ken Kurokawa and Tomomi Kuwahara and Kenshiro Oshima and Hidehiro Toh and Atsushi Toyoda and Hideto Takami and Hidetoshi Morita and Vineet K. Sharma and Tulika P. Srivastava and Todd D.  Taylor and Hideki Noguchi and Hiroshi Mori and Yoshitoshi Ogura and Dusko S. Ehrlich and Kikuji Itoh and Toshihisa Takagi and yoshiyuki sakaki and Tetsuya Hayashi and Masahira Hattori},
  title = {Comparative Metagenomics Revealed Commonly Enriched Gene Sets in Human Gut Microbiomes},
  journal = {DNA research},
  year = 2007,
}

@inproceedings{CTT100767913,
  author = {梶谷嶺 and 野口英樹 and 桑原知己 and 小椋義俊 and 林哲也 and 伊藤武彦},
  title = {メタゲノム用de novoアセンブリ・クラスタリングツールMetaPlatanusの開発},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100767911,
  author = {吉村大 and 後藤恭宏 and 小椋義俊 and 林哲也 and 伊藤武彦},
  title = {全ゲノム配列情報を用いた近縁菌株の迅速高精度系統解析手法の開発：病原菌感染経路推測への応用},
  booktitle = {},
  year = 2015,
}

@inproceedings{CTT100767932,
  author = {梶谷嶺 and 小椋義俊 and 桑原知己 and 林哲也 and 伊藤武彦},
  title = {メタゲノム用de novoアセンブラの開発およびIlluminaデータを用いたベンチマーク},
  booktitle = {},
  year = 2014,
}

@inproceedings{CTT100767939,
  author = {矢花充 and 長安英治 and 小椋義俊 and 林哲也 and 丸山治彦 and 伊藤武彦},
  title = {高ヘテロ接合性をもつベネズエラ糞線虫のゲノム解析},
  booktitle = {},
  year = 2012,
}

@inproceedings{CTT100767935,
  author = {原田真幸 and 小椋義俊 and 伊藤武彦 and 桑原知巳 and 林哲也},
  title = {ヒト体内細菌叢における接合型トランスポゾンの解析},
  booktitle = {},
  year = 2012,
}