@article{CTT100839992,
  author = {Takuji Yamada},
  title = {Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer},
  journal = {Nature Medicine},
  year = 2019,
}

@article{CTT100704599,
  author = {Yuki Moriya and Takuji Yamada and Shujiro Okuda and Masaaki Kotera and Zenichi Nakagawa and Toshiaki Tokimatsu and Susumu Goto and Minoru Kanehisa},
  title = {Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs},
  journal = {Journal of Chemical Information and Modeling},
  year = 2016,
}

@article{CTT100686070,
  author = {Masahiro Yano and Hiroshi Mori and Yutaka Akiyama and Takuji Yamada and Ken Kurokawa},
  title = {CLAST: CUDA implemented large-scale alignment search tool},
  journal = {BMC Bioinformatics 2014},
  year = 2014,
}

@article{CTT100648274,
  author = {T. Yamada and A. S. Waller and J. Raes and A. Zelezniak and N. Perchat and A. Perret and M. Salanoubat and K. R. Patil and J. Weissenbach and P. Bork},
  title = {Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours},
  journal = {Mol Syst Biol},
  year = 2012,
}

@article{CTT100648264,
  author = {D. M. Kristensen and A. S. Waller and T. Yamada and P. Bork and A. R. Mushegian and E. V. Koonin},
  title = {Orthologous gene clusters and taxon signature genes for viruses of prokaryotes},
  journal = {J Bacteriol},
  year = 2012,
}

@article{CTT100648260,
  author = {M. Arumugam and J. Raes and E. Pelletier and D. Le Paslier and T. Yamada and D. R. Mende and G. R. Fernandes and J. Tap and T. Bruls and J. M. Batto and M. Bertalan and N. Borruel and F. Casellas and L. Fernandez and L. Gautier and T. Hansen and M. Hattori and T. Hayashi and M. Kleerebezem and K. Kurokawa and M. Leclerc and F. Levenez and C. Manichanh and H. B. Nielsen and T. Nielsen and N. Pons and J. Poulain and J. Qin and T. Sicheritz-Ponten and S. Tims and D. Torrents and E. Ugarte and E. G. Zoetendal and J. Wang and F. Guarner and O. Pedersen and W. M. de Vos and S. Brunak and J. Dore and M. Antoln and F. Artiguenave and H. M. Blottiere and M. Almeida and C. Brechot and C. Cara and C. Chervaux and A. Cultrone and C. Delorme and G. Denariaz and R. Dervyn and K. U. Foerstner and C. Friss and M. van de Guchte and E. Guedon and F. Haimet and W. Huber and J. van Hylckama-Vlieg and A. Jamet and C. Juste and G. Kaci and J. Knol and O. Lakhdari and S. Layec and K. Le Roux and E. Maguin and A. M駻ieux and R. Melo Minardi and C. M'rini and J. Muller and R. Oozeer and J. Parkhill and P. Renault and M. Rescigno and N. Sanchez and S. Sunagawa and A. Torrejon and K. Turner and G. Vandemeulebrouck and E. Varela and Y. Winogradsky and G. Zeller and J. Weissenbach and S. D. Ehrlich and P. Bork and MetaHIT Consortium},
  title = {Enterotypes of the human gut microbiome},
  journal = {Nature},
  year = 2011,
}

@article{CTT100648261,
  author = {J. K. Colbourne and M. E. Pfrender and D. Gilbert and W. K. Thomas and A. Tucker and T. H. Oakley and S. Tokishita and A. Aerts and G. J. Arnold and M. K. Basu and D. J. Bauer and C. E. C.ceres and L. Carmel and C. Casola and J. H. Choi and J. C. Detter and Q. Dong and S. Dusheyko and B. D. Eads and T. Frlich and K. A. Geiler-Samerotte and D. Gerlach and P. Hatcher and S. Jogdeo and J. Krijgsveld and E. V. Kriventseva and D. K. ltz and C. Laforsch and E. Lindquist and J. Lopez and J. R. Manak and J. Muller and J. Pangilinan and R. P. Patwardhan and S. Pitluck and E. J. Pritham and A. Rechtsteiner and M. Rho and I. B. Rogozin and O. Sakarya and A. Salamov and S. Schaack and H. Shapiro and Y. Shiga and C. Skalitzky and Z. Smith and A. Souvorov and W. Sung and Z. Tang and D. Tsuchiya and H. Tu and H. Vos and M. Wang and Y. I. Wolf and H. Yamagata and T. Yamada and Y. Ye and J. R. Shaw and J. Andrews and T. J. Crease and H. Tang and S. M. Lucas and H. M. Robertson and P. Bork and E. V. Koonin and E. M. Zdobnov and I. V. Grigoriev and M. Lynch and J. L. Boore},
  title = {The ecoresponsive genome of Daphnia pulex},
  journal = {Science},
  year = 2011,
}

@article{CTT100648269,
  author = {J. Raes and I. Letunic and T. Yamada and L. J. Jensen and P. Bork},
  title = {Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data},
  journal = {Mol Syst Biol},
  year = 2011,
}

@article{CTT100648270,
  author = {J. Raes and I. Letunic and T. Yamada and L. J. Jensen and P. Bork},
  title = {Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data},
  journal = {Mol Syst Biol},
  year = 2011,
}

@article{CTT100648273,
  author = {T. Yamada and I. Letunic and S. Okuda and M. Kanehisa and P. Bork},
  title = {iPath2.0: interactive pathway explorer},
  journal = {Nucleic Acids Res},
  year = 2011,
}

@article{CTT100648271,
  author = {J. H. Werren and S. Richards and C. A. Desjardins and O. Niehuis and J. Gadau and J. K. Colbourne and L. W. Beukeboom and C. Desplan and C. G. Elsik and C. J. Grimmelikhuijzen and P. Kitts and J. A. Lynch and T. Murphy and D. C. Oliveira and C. D. Smith and L. van de Zande and K. C. Worley and E. M. Zdobnov and M. Aerts and S. Albert and V. H. Anaya and J. M. Anzola and A. R. Barchuk and S. K. Behura and A. N. Bera and M. R. Berenbaum and R. C. Bertossa and M. M. Bitondi and S. R. Bordenstein and P. Bork and E. Bornberg-Bauer and M. Brunain and G. Cazzamali and L. Chaboub and J. Chacko and D. Chavez and C. P. Childers and J. H. Choi and M. E. Clark and C. Claudianos and R. A. Clinton and A. G. Cree and A. S. Cristino and P. M. Dang and A. C. Darby and D. C. de Graaf and B. Devreese and H. H. Dinh and R. Edwards and N. Elango and E. Elhaik and O. Ermolaeva and J. D. Evans and S. Foret and G. R. Fowler and D. Gerlach and J. D. Gibson and D. G. Gilbert and D. Graur and S. Grnder and D. E. Hagen and Y. Han and F. Hauser and D. Hultmark and H. C. Hunter and G. D. Hurst and S. N. Jhangian and H. Jiang and R. M. Johnson and A. K. Jones and T. Junier and T. Kadowaki and A. Kamping and Y. Kapustin and B. Kechavarzi and J. Kim and B. Kiryutin and T. Koevoets and C. L. Kovar and E. V. Kriventseva and R. Kucharski and H. Lee and S. L. Lee and K. Lees and L. R. Lewis and D. W. Loehlin and J. M. Logsdon and J. A. Lopez and R. J. Lozado and D. Maglott and R. Maleszka and A. Mayampurath and D. J. Mazur and M. A. McClure and A. D. Moore and M. B. Morgan and J. Muller and M. C. Munoz-Torres and D. M. Muzny and L. V. Nazareth and S. Neupert and N. B. Nguyen and F. M. Nunes and J. G. Oakeshott and G. O. Okwuonu and B. A. Pannebakker and V. R. Pejaver and Z. Peng and S. C. Pratt and R. Predel and L. L. Pu and H. Ranson and R. Raychoudhury and A. Rechtsteiner and J. T. Reese and J. G. Reid and M. Riddle and H. M. Robertson and J. Romero-Severson and M. Rosenberg and T. B. Sackton and D. B. Sattelle and H. Schlns and T. Schmitt and M. Schneider and A. Schler and A. M. Schurko and D. M. Shuker and Z. L. Simies and S. Sinha and Z. Smith and V. Solovyev and A. Souvorov and A. Springauf and E. Stafflinger and D. E. Stage and M. Stanke and Y. Tanaka and A. Telschow and C. Trent and S. Vattathil and E. C. Verhulst and L. Viljakainen and K. W. Wanner and R. M. Waterhouse and J. B. Whitfield and T. E. Wilkes and M. Williamson and J. H. Willis and F. Wolschin and S. Wyder and T. Yamada and S. V. Yi and C. N. Zecher and L. Zhang and R. A. Gibbs and Nasonia Genome Working Group},
  title = {Functional and evolutionary insights from the genomes of three parasitoid Nasonia species},
  journal = {Science},
  year = 2010,
}

@article{CTT100648268,
  author = {J. Qin and R. Li and J. Raes and M. Arumugam and K. S. Burgdorf and C. Manichanh and T. Nielsen and N. Pons and F. Levenez and T. Yamada and D. R. Mende and J. Li and J. Xu and S. Li and D. Li and J. Cao and B. Wang and H. Liang and H. Zheng and Y. Xie and J. Tap and P. Lepage and M. Bertalan and J. M. Batto and T. Hansen and D. Le Paslier and A. Linneberg and H. B. Nielsen and E. Pelletier and P. Renault and T. Sicheritz-Ponten and K. Turner and H. Zhu and C. Yu and M. Jian and Y. Zhou and Y. Li and X. Zhang and N. Qin and H. Yang and J. Wang and S. Brunak and J. Dore and F. Guarner and K. Kristiansen and O. Pedersen and J. Parkhill and J. Weissenbach and P. Bork and S. D. Ehrlich and MetaHIT Consortium},
  title = {A human gut microbial gene catalogue established by metagenomic sequencing},
  journal = {Nature},
  year = 2010,
}

@article{CTT100648275,
  author = {E. Yus and T. Maier and K. Michalodimitrakis and V. van Noort and T. Yamada and W. H. Chen and J. A. Wodke and M. Guell and S. Martnez and R. Bourgeois and S. Kuhner and E. Raineri and I. Letunic and O. V. Kalinina and M. Rode and R. Herrmann and R. GutiErrez-Gallego and R. B. Russell and A. C. Gavin and P. Bork and L. Serrano},
  title = {Impact of genome reduction on bacterial metabolism and its regulation},
  journal = {Science},
  year = 2009,
}

@article{CTT100648272,
  author = {T. Yamada and P. Bork},
  title = {Evolution of biomolecular networks: lessons from metabolic and protein interactions},
  journal = {Nat Rev Mol Cell Biol},
  year = 2009,
}

@article{CTT100648263,
  author = {M. Guell and V. van Noort and E. Yus and W. H. Chen and J. Leigh-Bell and K. Michalodimitrakis and T. Yamada and M. Arumugam and T. Doerks and S. Kuhner and M. Rode and M. Suyama and S. Schmidt and A. C. Gavin and P. Bork and L. Serrano},
  title = {Transcriptome complexity in a genome-reduced bacterium},
  journal = {Science},
  year = 2009,
}

@article{CTT100648262,
  author = {T. A. Gianoulis and J. Raes and P. V. Patel and R. Bjornson and J. O. Korbel and I. Letunic and T. Yamada and A. Paccanaro and L. J. Jensen and M. Snyder and P. Bork and M. B. Gerstein},
  title = {Quantifying environmental adaptation of metabolic pathways in metagenomics},
  journal = {Proc Natl Acad Sci U S A},
  year = 2009,
}

@article{CTT100648265,
  author = {S. Kuhner and V. van Noort and M. J. Betts and A. Leo-Macias and C. Batisse and M. Rode and T. Yamada and T. Maier and S. Bader and P. Beltran-Alvarez and D. Castao-Diez and W. H. Chen and D. Devos and M. Guell and T. Norambuena and I. Racke and V. Rybin and A. Schmidt and E. Yus and R. Aebersold and R. Herrmann and B. Bttcher and A. S. Frangakis and R. B. Russell and L. Serrano and P. Bork and A. C. Gavin},
  title = {Proteome organization in a genome-reduced bacterium},
  journal = {Science},
  year = 2009,
}

@article{CTT100648267,
  author = {S. Okuda and T. Yamada and M. Hamajima and M. Itoh and T. Katayama and P. Bork and S. Goto and M. Kanehisa},
  title = {KEGG Atlas mapping for global analysis of metabolic pathways},
  journal = {Nucleic Acids Res},
  year = 2008,
}

@article{CTT100648266,
  author = {I. Letunic and T. Yamada and M. Kanehisa and P. Bork},
  title = {iPath: interactive exploration of biochemical pathways and networks},
  journal = {Trends Biochem Sci},
  year = 2008,
}

@misc{CTT100882387,
  author = {山田拓司 and 新開　省二 and 北村　明彦 and 牛田　一成 and 土田　さやか and 上田　敦史 and 甲田　哲之 and 狩屋　貴洋 and 川原　知浩 and 小林　洋大},
  title = {脳機能の低下の予防若しくは治療、又は脳機能の維持若しくは改善をするための組成物},
  howpublished = {公開特許},
  year = 2022,
  month  = {},
  note   = {PCT/JP2021/044393(2021/12/03), WO 2022/118944(2022/06/09)}
}


@misc{CTT100865560,
  author = {山田拓司 and 山本希 and 小谷野仁 and 澤田　和典　  and 矢後　妃奈子　 },
  title = {発酵原料の発酵産物の産生促進用組成物及びそれを使用する発酵製品の製造方法},
  howpublished = {登録特許},
  year = 2021,
  month  = {},
  note   = {特願2021-087971(2021/05/25), 特許第6953106号(2021/10/01)}
}


@misc{CTT100864145,
  author = {山田拓司 and 澤田　和典　},
  title = {免疫鎮静作用を有する乳酸菌},
  howpublished = {登録特許},
  year = 2021,
  month  = {},
  note   = {特願2021-086401(2021/05/21), 特許第6928195号(2021/08/10)}
}


@misc{CTT100892241,
  author = {山田拓司 and 澤田　和典　},
  title = {免疫賦活化作用を有する乳酸菌},
  howpublished = {登録特許},
  year = 2023,
  month  = {},
  note   = {特願2021-086355(2021/05/21), 特開2022-179099(2022/12/02), 特許第7337878号(2023/08/25)}
}


@misc{CTT100881806,
  author = {山田拓司 and 澤田　和典},
  title = {免疫賦活化作用を有する乳酸菌},
  howpublished = {登録特許},
  year = 2022,
  month  = {},
  note   = {特願2021-086460(2021/05/21), 特許第7077458号(2022/05/20)}
}


@misc{CTT100866378,
  author = {山田拓司 and 山本希 and 小谷野仁 and 澤田　和典　 and 矢後　妃奈子　},
  title = {発酵原料の発酵産物の産生抑制用組成物及びそれを使用する発酵製品の製造方法},
  howpublished = {登録特許},
  year = 2021,
  month  = {},
  note   = {特願2021-087947(2021/05/25), 特許第6973968号(2021/11/08)}
}


@misc{CTT100885382,
  author = {山田拓司 and 山本希 and 小谷野仁 and 澤田　和典 and 矢後　妃奈子},
  title = {発酵原料の発酵産物の産生促進用組成物及びそれを使用する発酵製品の製造方法},
  howpublished = {公開特許},
  year = 2022,
  month  = {},
  note   = {特願2021-061337(2021/03/31), 特開2022-157231(2022/10/14)}
}


@misc{CTT100885381,
  author = {山田拓司 and 山本希 and 小谷野仁 and 澤田　和典 and 矢後　妃奈子},
  title = {発酵原料の発酵産物の産生抑制用組成物及びそれを使用する発酵製品の製造方法},
  howpublished = {公開特許},
  year = 2022,
  month  = {},
  note   = {特願2021-061457(2021/03/31), 特開2022-157316(2022/10/14)}
}


@misc{CTT100885394,
  author = {山田拓司 and 山本希 and 小谷野仁 and 澤田　和典 and 矢後　妃奈子},
  title = {発酵原料の発酵産物の産生促進用組成物及びそれを使用する発酵製品の製造方法},
  howpublished = {公開特許},
  year = 2022,
  month  = {},
  note   = {特願2021-061471(2021/03/31), 特開2022-157325(2022/10/14)}
}


@misc{CTT100885392,
  author = {山田拓司 and 山本希 and 小谷野仁 and 澤田　和典 and 矢後　妃奈子},
  title = {発酵原料の発酵産物の産生抑制用組成物及びそれを使用する発酵製品の製造方法},
  howpublished = {公開特許},
  year = 2022,
  month  = {},
  note   = {特願2021-061367(2021/03/31), 特開2022-157250(2022/10/14)}
}


@misc{CTT100860421,
  author = {山田拓司 and 福田　真嗣　 and 谷内田 真一　},
  title = {早期大腸癌の検出方法},
  howpublished = {登録特許},
  year = 2021,
  month  = {},
  note   = {特願2019-569632(2019/02/04), 再表2019/151515(2021/04/08), 特許第6896258号(2021/06/11)}
}