@book{CTT100804863, author = {Hiroshi Kimura and Yuko Sato}, title = {DNA replication and histone modification}, publisher = {}, year = 2016, } @article{CTT100898824, author = {Ksenia Kuznetsova and Noemie M. Chabot and Martino Ugolini and Edlyn Wu and Manan Lalit and Haruka Oda and Yuko Sato and Hiroshi Kimura and Florian Jug and Nadine L. Vastenhouw}, title = {Nanog organizes transcription bodies}, journal = {Current Biology}, year = 2022, } @article{CTT100898827, author = {Yohei Kono and Stephen A. Adam and Yuko Sato and Karen L. Reddy and Yixian Zheng and Ohad Medalia and Robert D. Goldman and Hiroshi Kimura and Takeshi Shimi}, title = {Nucleoplasmic lamin C rapidly accumulates at sites of nuclear envelope rupture with BAF and cGAS}, journal = {J Cell Biol}, year = 2022, } @article{CTT100880996, author = {Yancen Dai and Yuko Sato and Bo Zhu and Tetsuya Kitaguchi and Hiroshi Kimura and Farid J. Ghadess and Hiroshi Ueda}, title = {Intra Q-body: an antibody-based fluorogenic probe for intracellular proteins that allows live cell imaging and sorting}, journal = {Chemical Science}, year = 2022, } @article{CTT100877326, author = {Rang FJ and de Luca KL and de Vries SS and Valdes-Quezada C and Boele E and Nguyen PD and Guerreiro I and Sato Y and Kimura H and Bakkers J and Kind J}, title = {Single-cell profiling of transcriptome and histone modifications with EpiDamID}, journal = {Mol Cell}, year = 2022, } @article{CTT100876658, author = {Hiroshi Kimura and Yuko Sato}, title = {Imaging transcription elongation dynamics by new technologies unveils the organization of initiation and elongation in transcription factories}, journal = {Current Opinion in Cell Biology}, year = 2022, } @article{CTT100869295, author = {Uchino S and Ito Y and Sato Y and Handa T and Ohkawa Y and Tokunaga M and Kimura H}, title = {Live imaging of transcription sites using an elongating RNA polymerase II-specific probe.}, journal = {J Cell Biol}, year = 2021, } @article{CTT100876657, author = {Yuko Sato and Masaru Nakao and Hiroshi Kimura}, title = {Live-cell imaging probes to track chromatin modification dynamics}, journal = {Microscopy (Oxf)}, year = 2021, } @article{CTT100876674, author = {Yuko Sato and Hiroshi Kimura}, title = {Multiplexed Imaging of Posttranslational Modifications of Endogenous Proteins in Live Cells}, journal = {Methods in Molecular Biology}, year = 2021, } @article{CTT100853917, author = {Yuko Sato and Hiroshi Kimura}, title = {Dynamic Behavior of Inactive X Chromosome Territory During the Cell Cycle as Revealed by H3K27me3-Specific Intracellular Antibody}, journal = {Methods in Molecular Biology}, year = 2021, } @article{CTT100876683, author = {Mio K. Shibuta and Takuya Sakamoto and Tamako Yamaoka and Mayu Yoshikawa and Shusuke Kasamatsu and Noriyoshi Yagi and Satoru Fujimoto and Takamasa Suzuki and Satoshi Uchino and Yuko Sato and Hiroshi Kimura and Sachihiro Matsunaga}, title = {A live imaging system to analyze spatiotemporal dynamics of RNA polymerase II modification in Arabidopsis thaliana}, journal = {Communications Biology}, year = 2021, } @article{CTT100856717, author = {Uchino S and Ito Y and Sato Y and Handa T and Yasuyuki Ohkawa and Tokunaga M and Kimura H}, title = {Visualizing transcription sites in living cells using a genetically encoded probe specific for the elongating form of RNA polymerase II}, journal = {bioRxiv}, year = 2021, } @article{CTT100853914, author = {Lennart Hilbert and Yuko Sato and Ksenia Kuznetsova and Tommaso Bianucci and Hiroshi Kimura and Frank Jülicher and Alf Honigmann and Vasily Zaburdaev and Nadine L. Vastenhouw}, title = {Transcription organizes euchromatin via microphase separation}, journal = {Nature Communications}, year = 2021, } @article{CTT100853916, author = {Sjoerd J D Tjalsma and Mayako Hori and Yuko Sato and Aurelie Bousard and Akito Ohi and Ana Cláudia Raposo and Julia Roensch and Agnes Le Saux and Jumpei Nogami and Kazumitsu Maehara and Tomoya Kujirai and Tetsuya Handa and Sandra Bagés-Arnal and Yasuyuki Ohkawa and Hitoshi Kurumizaka and Simão Teixeira da Rocha and Jan J Żylicz and Hiroshi Kimura and Edith Heard}, title = {H4K20me1 and H3K27me3 are concurrently loaded onto the inactive X chromosome but dispensable for inducing gene silencing}, journal = {EMBO reports}, year = 2021, } @article{CTT100853915, author = {Yusuke Fujiwara and Yuki Yamanashi and Akiko Fujimura and Yuko Sato and Tomoya Kujirai and Hitoshi Kurumizaka and Hiroshi Kimura and Kenzo Yamatsugu and Shigehiro A. Kawashima and Motomu Kanai}, title = {Live-Cell Epigenome Manipulation by Synthetic Histone Acylation Catalyst System}, journal = {Proceedings of the National Academy of Sciences of the United States of America}, year = 2021, } @article{CTT100836859, author = {Chenjiang Liu and Yoshihiro Kobashigawa and Soichiro Yamauchi and Yuya Toyota and Manaka Teramoto and Yuka Ikeguchi and Natsuki Fukuda and Takashi Sato and Yuko Sato and Hiroshi Kimura and Hiroshi Morioka}, title = {Preparation of single-chain Fv antibodies in the cytoplasm of Escherichia coli by simplified and systematic chaperone optimization}, journal = {The Journal of Biochemistry,}, year = 2019, } @article{CTT100834634, author = {Yuko Sato and Lennart Hilbert and Haruka Oda and Yinan Wan and John M. Heddleston and Teng-Leong Chew and Vasily Zaburdaev and Philipp Keller and Timothee Lionnet and Nadine Vastenhouw and Hiroshi Kimura}, title = {Histone H3K27 acetylation precedes active transcription during zebrafish zygotic genome activation as revealed by live cell analysis}, journal = {Development}, year = 2019, } @article{CTT100836860, author = {Chan-I Chung and Yuko Sato and Yuki Ohmuro-Matsuyama and Shinichi Machida and Hitoshi Kurumizaka and Hiroshi Kimura and Hiroshi Ueda}, title = {Intrabody-based FRET probe to visualize endogenous histone acetylation}, journal = {Scientific Reports}, year = 2019, } @article{CTT100822329, author = {Yuko Sato and Timothy J. Stasevich and Hiroshi Kimura}, title = {Visualizing the Dynamics of Inactive X Chromosomes in Living Cells Using Antibody-Based Fluorescent Probes}, journal = {Methods Mol Biol}, year = 2018, } @article{CTT100834638, author = {Lusy Handoko and Bogumil Kaczkowski and Chung-Chau Hon and Marina Lizio and Masatoshi Wakamori and Takayoshi Matsuda and Takuhiro Ito and Prashanti Jeyamohan and Yuko Sato and Kensaku Sakamoto and Shigeyuki Yokoyama and Hiroshi Kimura and Aki Minoda and Takashi Umehara}, title = {JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states}, journal = {Epigenetics}, year = 2018, } @article{CTT100762797, author = {Akihito Harada and Kazumitsu Maehara and Yusuke Ono and Hiroyuki Taguchi and Kiyoshi Yoshioka and Yasuo Kitajima and Yan Xie and Yuko Sato and Takeshi Iwasaki and Jumpei Nogami and Seiji Okada and Tetsuro Komatsu and Yuichiro Semba and Tatsuya Takemoto and Hiroshi Kimura and Hitoshi Kurumizaka and Yasuyuki Ohkawa}, title = {Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration}, journal = {Nature Communications}, year = 2018, } @article{CTT100822330, author = {R. Arai and T. Sugawara and Y. Minakuchi and Yuko Sato and A. Toyoda and K. Nabeshima and H. Kimura and A. Kimura}, title = {Reduction in chromosome mobility accompanies nuclear organization during early embryogenesis in Caenorhabditis elegans}, journal = {Scientific reports}, year = 2017, } @article{CTT100762795, author = {Yuko Sato and Hiroshi Kimura}, title = {Semi-quantitative Analysis of H4K20me1 Levels in Living Cells Using Mintbody}, journal = {bio-protocol}, year = 2017, } @article{CTT100762794, author = {Yuki Kuniyoshi and Kazumitsu Maehara and Takeshi Iwasaki and Masayasu Hayashi and Yuichiro Semba and Masatoshi Fujita and Yuko Sato and Hiroshi Kimura and Akihito Harada and Yasuyuki Ohkawa}, title = {Identification of immunoglobulin gene sequences from a small read number of mRNA-seq using hybridomas}, journal = {PLOS ONE}, year = 2016, } @article{CTT100822332, author = {Yuko Sato and M. Mukai and H. Kimura}, title = {Histone Acetylation on Drosophila Polytene Chromosomes Visualized by Mintbody}, journal = {Cytologia}, year = 2015, } @article{CTT100762788, author = {Kazumitsu Maehara and Akihito Harada and Yuko Sato and Masaki Matsumoto and Keiichi I. Nakayama and Hiroshi Kimura and Yasuyuki Ohkawa}, title = {Tissue-specific expression of histone H3 variants diversified after species separation}, journal = {Epigenetics & Chromatin}, year = 2015, } @article{CTT100762787, author = {Akihito Harada and Kazumitsu Maehara and Yuko Sato and Daijiro Konno and Taro Tachibana and Hiroshi Kimura and Yasuyuki Ohkawa}, title = {Incorporation of histone H3.1 suppresses the lineage potential of skeletal muscle}, journal = {Nucleic Acids Research}, year = 2015, } @article{CTT100774298, author = {Timothy J. Stasevich and Yoko Hayashi-Takanaka and Yuko Sato and Kazumitsu Maehara and Yasuyuki Ohkawa and Kumiko Sakata-Sogawa and Makio Tokunaga and Takahiro Nagase and Naohito Nozaki and James G. McNally and Hiroshi Kimura}, title = {Regulation of RNA polymerase II activation by histone acetylation in single living cells}, journal = {Nature}, year = 2014, } @article{CTT100762783, author = {Timothy J Stasevich and Yuko Sato and Naohito Nozaki and Hiroshi Kimura}, title = {Quantifying histone and RNA polymerase II post-translational modification dynamics in mother and daughter cells}, journal = {Methods}, year = 2014, } @article{CTT100762782, author = {Jun Ueda and Kazumitsu Maehara and Daisuke Mashiko and Takako Ichinose and Tatsuma Yao and Mayuko Hori and Yuko Sato and Hiroshi Kimura and Yasuyuki Ohkawa and Kazuo Yamagata}, title = {Heterochromatin Dynamics during the Differentiation Process Revealed by the DNA Methylation Reporter Mouse, MethylRO}, journal = {Stem Cell Reports}, year = 2014, } @article{CTT100762781, author = {Yasuhiro Arimura and Hiroshi Kimura and Takashi Oda and Koichi Sato and Akihisa Osakabe and Hiroaki Tachiwana and Yuko Sato and Yasuha Kinugasa and Tsuyoshi Ikura and Masaaki Sugiyama and Mamoru Sato and Hitoshi Kurumizaka}, title = {Structural basis of a nucleosome containing histone H2A.B/H2A.Bbd that transiently associates with reorganized chromatin}, journal = {Scientific Reports}, year = 2013, } @article{CTT100762780, author = {Yuko Sato and Masanori Mukai and Jun Ueda and Michiko Muraki and Timothy J. Stasevich and Naoki Horikoshi and Tomoya Kujirai and Hiroaki Kita and Taisuke Kimura and Seiji Hira and Yasushi Okada and Yoko Hayashi-Takanaka and Chikashi Obuse and Hitoshi Kurumizaka and Atsuo Kawahara and Kazuo Yamagata and Naohito Nozaki and Hiroshi Kimura}, title = {Genetically encoded system to track histone modification in vivo}, journal = {Scientific Reports}, year = 2013, } @article{CTT100762779, author = {Taichi NISHIZUKA and Yoshiko FUJITA and Yuko SATO and Atushi NAKANO and Akemi KAKINO and Shunji OHSHIMA and Tomomasa KANDA and Ryo YOSHIMOTO and Tatsuya SAWAMURA}, title = {Procyanidins are potent inhibitors of LOX-1: a new player in the French Paradox}, journal = {Proc Jpn Acad Ser B Phys Biol Sci}, year = 2011, } @article{CTT100762777, author = {Atushi Nakano and Nobutaka Inoue and Yuko Sato and Norihisa Nishimichi and Kenji Takikawa and Yoshiko Fujita and Akemi Kakino and Kazunori Otsui and Saburo Yamaguchi and Haruo Matsuda and Tatsuya Sawamura}, title = {LOX-1 mediates vascular lipid retention under hypertensive state}, journal = {Journal of Hypertension}, year = 2010, } @article{CTT100762778, author = {Tetsuya Matsumoto and Masatoshi Fujita and Tatsuya Sawamura and Akemi Kakino and Yuko Sato and Yoshiko Fujita and Haruo Matsuda and Mamoru Nakanishi and Kagehiro Uchida and Izuru Nakae and Hiroshi Kanda and Akira Yoshida and Kunihisa Miwa and Hideki Hayashi and Kenichi Mitsunami and Minoru Horie}, title = {Pitavastatin reduces lectin-like oxidized low-density lipoprotein receptor-1 ligands in hypercholesterolemic humans}, journal = {Lipids}, year = 2010, } @article{CTT100762776, author = {Tomohide Takaya and Hiromichi Wada and Tatsuya Morimoto and Yoichi Sunagawa and Teruhisa Kawamura and Rieko Takanabe-Mori and Akira Shimatsu and Yoshiko Fujita and Yuko Sato and Masatoshi Fujita and Takeshi Kimura and Tatsuya Sawamura and Koji Hasegawa}, title = {Left ventricular expression of lectin-like oxidized low-density lipoprotein receptor-1 in failing rat hearts}, journal = {Circulation Journal}, year = 2010, } @article{CTT100762774, author = {Yoshiko Fujita and Akemi Kakino and Mariko Harada-Shiba and Yuko Sato and Kazunori Otsui and Ryo Yoshimoto and Tatsuya Sawamura}, title = {C-reactive protein uptake by macrophage cell line via class-A scavenger receptor}, journal = {Clinical Chemistry}, year = 2010, } @article{CTT100762773, author = {Shin Iwamoto and Norihisa Nishimichi and Yoshiko Tateishi and Yuko Sato and Hiroyuki Horiuchi and Shuichi Furusawa and Tatsuya Sawamura and Haruo Matsuda}, title = {Generation and characterization of chicken monoclonal antibodies against human LOX-1}, journal = {MAbs}, year = 2009, } @article{CTT100762775, author = {Nobutaka Inoue and Tomonori Okamura and Yoshihiro Kokubo and Yoshiko Fujita and Yuko Sato and Mamoru Nakanishi and Kazuki Yanagida and Akemi Kakino and Shin Iwamoto and Makoto Watanabe and Sayoko Ogura and Kazunori Otsui and Haruo Matsuda and Kagehiro Uchida and Ryo Yoshimoto and Tatsuya Sawamura}, title = {LOX index, a novel predictive biochemical marker for coronary heart disease and stroke}, journal = {Clinical Chemistry}, year = 2009, } @article{CTT100762772, author = {Yoshiko Fujita and Akemi Kakino and Norihisa Nishimichi and Saburo Yamaguchi and Yuko Sato and Sachiko Machida and Luciano Cominacini and Yves Delneste and Haruo Matsuda and Tatsuya Sawamura}, title = {Oxidized LDL receptor LOX-1 binds to C-reactive protein and mediates its vascular effects}, journal = {Clinical Chemistry}, year = 2009, } @article{CTT100762771, author = {Yuko Sato and Norihisa Nishimichi and Atsushi Nakano and Kenji Takikawa and Nobutaka Inoue and Haruo Matsuda and Tatsuya Sawamura}, title = {Determination of LOX-1-ligand activity in mouse plasma with a chicken monoclonal antibody for ApoB}, journal = {Atherosclerosis}, year = 2008, } @article{CTT100762770, author = {Yuko Sato and Takashi Baba and Mohamad Zubair and Kanako Miyabayashi and Yoshiro Toyama and Mamiko Maekawa and Akiko Owaki and Hirofumi Mizusaki and Tatsuya Sawamura and Kiyotaka Toshimori and Ken‐Ichirou Morohashi and Yuko Katoh‐Fukui}, title = {Importance of forkhead transcription factor Fkhl18 for development of testicular vasculature}, journal = {Molecular reproduction and development}, year = 2008, } @inproceedings{CTT100898833, author = {Yuko Sato and Hiroshi Kimura}, title = {Transcriptional regulation and chromatin modifications during zebrafish zygotic genome activation.}, booktitle = {}, year = 2022, } @inproceedings{CTT100920373, author = {上田 宏 and DAI YANCEN and 佐藤 優子 and 朱 博 and 北口 哲也 and 木村 宏 and Farid J. Ghadessy}, title = {生細胞内タンパク質の動態観察とそれによる細胞分別が可能な蛍光抗体プローブIntra Q-bodyの構築}, booktitle = {第16回バイオ関連化学シンポジウム 要旨集}, year = 2022, } @inproceedings{CTT100898831, author = {Yuko Sato and Yuma Ito and Satoshi Uchino and Makio Tokunaga and Hiroshi Kimura}, title = {Chromatin mobility of X-linked loci and its epigenetic regulation}, booktitle = {}, year = 2022, } @inproceedings{CTT100876647, author = {佐藤優子 and 内野哲志 and 岡翔平 and 木村宏}, title = {小分子抗体プローブを用いたエピジェネティクス修飾動態の生細胞イメージング}, booktitle = {}, year = 2022, } @inproceedings{CTT100875235, author = {Yancen Dai and Bo Zhu and Yuko Sato and Hiroshi Kimura and Farid J. Ghadessy and Tetsuya Kitaguchi and Hiroshi Ueda.}, title = {Development of an immunofluorescence probe Q-body for the direct visualization of tumor marker p53 in fixed and living cells.}, booktitle = {化学工学会第87年会要旨集}, year = 2022, } @inproceedings{CTT100869300, author = {Satoshi Uchino and Yuma Ito and Jessica Dai and Yuko Sato and Tetsuya Handa and Yasuyuki Ohkawa and Makio Tokunaga and Hiroshi Kimura}, title = {Live imaging of the initiation and elongation forms of RNA polymerase II using phosphorylation-specific probes.}, booktitle = {}, year = 2022, } @inproceedings{CTT100876655, author = {Yuko Sato and Satoshi Uchino and Hiroshi Kimura}, title = {Chromatin mobility of X-linked loci and its transcription regulation}, booktitle = {}, year = 2022, } @inproceedings{CTT100869523, author = {内野 哲志 and 伊藤 由馬 and 佐藤 優子 and 半田 哲也 and 大川 恭行 and 徳永 万喜洋 and 木村 宏}, title = {リン酸化型RNAポリメラーゼII可視化プローブによる転写部位の生細胞観察}, booktitle = {}, year = 2021, } @inproceedings{CTT100869516, author = {内野 哲志 and 伊藤 由馬 and Jessica Dai and 佐藤 優子 and 半田 哲也 and 大川 恭行 and 徳永 万喜洋 and 木村 宏}, title = {転写伸長型RNAポリメラーゼII可視化プローブによる生細胞内における 転写伸長部位の観察}, booktitle = {}, year = 2021, } @inproceedings{CTT100876650, author = {佐藤優子 and 内野哲志 and 伊藤由馬 and 前原一満 and 大川恭行 and 徳永万喜洋 and 木村宏}, title = {生細胞プローブを用いた不活性化X染色体動態と転写制御の解析}, booktitle = {}, year = 2021, } @inproceedings{CTT100853904, author = {Yuko Sato and Nguyen Thi Bich Ngoc and Haruka Oda and Tetsuya Handa and Hidenori Nishihara and Akihito Harada and Yasuyuki Ohkawa and Hiroshi Kimura}, title = {Spatiotemporal dynamics of histone modifications during zebrafish zygotic genome activation}, booktitle = {}, year = 2020, } @inproceedings{CTT100834640, author = {佐藤優子 and 木村宏}, title = {Xist RNAの生細胞動態解析}, booktitle = {}, year = 2020, } @inproceedings{CTT100836141, author = {Yuko Sato and Lennart Hilbert and Vasily Zaburdaev and Nadine Vastenhouw and Hiroshi Kimura}, title = {Histone modification dynamics during zygotic genome activation}, booktitle = {}, year = 2019, } @inproceedings{CTT100772420, author = {Shuntaro Sato and Yuma Ito and Yuko Sato and Hiroshi Kimura and Makio Tokunaga}, title = {Single-molecule imaging of post-translational modification using genetically encoded antibody probe.}, booktitle = {}, year = 2018, } @inproceedings{CTT100816717, author = {佐藤優子 and 木村宏}, title = {細胞内抗体Mintbodyを用いた生細胞エピジェネティクス解析}, booktitle = {}, year = 2018, } @inproceedings{CTT100816719, author = {Yuko Sato and Hiroshi Kimura}, title = {Zygotic genome activation is dynamically mediated by histone acetylation in zebrafish}, booktitle = {}, year = 2018, } @inproceedings{CTT100806019, author = {Hilbert, Lennart and Yuko Sato and Hiroshi Kimura and Honigmann, Alf and Zaburdaev, Vasily and Vastenhouw, Nadine}, title = {Transcription Locally Disperses Chromatin and Thereby Organizes the Global Architecture of Interphase Nuclei}, booktitle = {BIOPHYSICAL JOURNAL}, year = 2017, } @inproceedings{CTT100806028, author = {Hilbert, L. and Yuko Sato and Kimura, H. and Julicher, F. and Honigmann, A. and Zaburdaev, V. and Vastenhouw, N.}, title = {Interphase chromatin is adaptively folded by ongoing transcription and RNA accumulation.}, booktitle = {MOLECULAR BIOLOGY OF THE CELL}, year = 2017, } @inproceedings{CTT100806036, author = {Handoko, L. and Chang, J. and Kaczkowski, B. and Fujita, K. and Lizio, M. and Yuko Sato and Wakamori, M. and Kimura, H. and Taniguchi, Y. and Yanagida, T. and Umehara, T. and Minoda, A.}, title = {Studying combinatorial histone modifications}, booktitle = {MOLECULAR BIOLOGY OF THE CELL}, year = 2016, } @misc{CTT100855455, author = {佐藤優子 and 木村宏}, title = {生きた細胞でクロマチン修飾変化を見る Mintbody}, year = 2020, } @misc{CTT100821928, author = {趙 寧 and 森崎達也 and 小田春佳 and 佐藤優子 and 木村 宏 and Stasevich Timothy J}, title = {タンパク質1分子を翻訳過程からイメージング可能なプローブ「HA Frankenbody」}, year = 2020, } @misc{CTT100811617, author = {佐藤優子 and 木村宏}, title = {遺伝子不活性化マークを生細胞で観察できる蛍光プローブ}, year = 2018, } @misc{CTT100811611, author = {木村宏 and 佐藤優子}, title = {遺伝子発現の理解と制御のための「ヌクレオーム」研究とエピゲノム編集}, year = 2017, } @misc{CTT100805088, author = {木村宏 and 佐藤優子}, title = {ゲノム,エピゲノムからヌクレオームへ:遺伝情報発現制御機構の包括的理解に向けて}, year = 2017, } @misc{CTT100840048, author = {木村宏 and 佐藤優子 and 大井彰人 and 胡桃坂 仁志 and 鯨井 智也 and 大川 恭行}, title = {ヒストンH3トリメチル化リシン特異的モノクローナル抗体又はその抗原結合性断片}, howpublished = {公開特許}, year = 2020, month = {}, note = {特願2017-111580(2017/06/06), 特開2020-127366(2020/08/27)} } @misc{CTT100809906, author = {木村宏 and 半田哲也 and 佐藤優子 and 林 陽子 and 大川 恭行  and 原田 哲仁  and 胡桃坂 仁志 }, title = {DNA結合タンパク質の結合領域の近傍に所望のDNA断片を挿入する方法}, howpublished = {登録特許}, year = 2021, month = {}, note = {特願2018-536938(2017/05/24), 再表2018/042776(2019/08/08), 特許第6943376号(2021/09/13)} }